View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6629_high_2 (Length: 587)
Name: NF6629_high_2
Description: NF6629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6629_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 578
Target Start/End: Complemental strand, 50654222 - 50653664
Alignment:
| Q |
17 |
ttaattttgttattttcattatttctagtattttttatagtgtgggttcttttacaaagtttaagaagacgccttttgatgcggccatagagtatagaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50654222 |
ttaattttgttattttcattatttctagtattttttatagtgtgggttcttttacaaagtttaagaagacgccttttgatgcggccatagagtatagaac |
50654123 |
T |
|
| Q |
117 |
tttgctattccaatttgttaagaaacataacaaaagttaaatgtatctctcnnnnnnnnnnnncttatataaaaatgttgtggcttgattattaattata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50654122 |
tttgctattccaatttgttaagaaacataacaaaagttaaatgtatctctcttttttatttttcttatataaaaatgttgtggcttgattattaagtata |
50654023 |
T |
|
| Q |
217 |
gtttagggcagaaagagaacagatatcgtacgttttcttcttgattagtcattttccatgattattttctcctctttttcaccctttatattctcaaatc |
316 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50654022 |
gtttagggcagaaagaaaacagatatcgtacgtcttcttcttgattagtcattttccatgattattttctcctcttcttcaccctttatattctcaaatc |
50653923 |
T |
|
| Q |
317 |
atttgatgagataaaattaatcgcatctaactggcgtagaaagcagctttattttaatatgatttctatatt----nnnnnnnnnngacaaatcatttat |
412 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50653922 |
atttgatgagataaaattagtcgcatctaactggcgtagaaagcagctttattttaatatgatttctatattaaaaaaaaaaaaaagacaaatcatttat |
50653823 |
T |
|
| Q |
413 |
caattatcacgattctacgtgaataattataatcannnnnnngagcaaccatgacaaaagaagttcactcattccatttttaataatatacctctcttac |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50653822 |
caattatcacgattctacgtgaataattataatcatttttttgcgcaaccatgacaaaagaagttcactcattccatttttaataatatacctctcttac |
50653723 |
T |
|
| Q |
513 |
tctgttaaatttaaatttgaatttggtgtggcggcagaacctcttctgaaattttgatggcctatg |
578 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
50653722 |
tctg------ttaaatttgaatttggtgtggcggcaggacc-cttttaaaattttgatggcctatg |
50653664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University