View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6629_high_5 (Length: 292)
Name: NF6629_high_5
Description: NF6629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6629_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 45343138 - 45342998
Alignment:
| Q |
131 |
cacggccacagttaaaacttaaaactccccacgtgcggttcctctaactaaccatggttaaatccaatccaaccccacaaatctaaaagactaaaacaaa |
230 |
Q |
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| T |
45343138 |
cacggccacagttaaaacttaaaactccccacgtgcggttcctctaactaaccatggttaaat-----ccaaccccccaaatctaaaagactaaaacaaa |
45343044 |
T |
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| Q |
231 |
cacctccttcattttcaatcttatagtctgaaaaacacaaagcata |
276 |
Q |
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| T |
45343043 |
accctccttcattttcaattttatagtctgaaaaacacaaagcata |
45342998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 45343243 - 45343171
Alignment:
| Q |
9 |
gagatgaagaaacaaaaaaggcgcatttgctttggtagctcatcattaaccaaagagaatgtgaatgatacta |
81 |
Q |
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| T |
45343243 |
gagatgaagaaacaaaaaaggcgcatttgctttggtagctcatcattaaccaaagagaatgtgaatgatacta |
45343171 |
T |
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