View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6629_low_1 (Length: 661)
Name: NF6629_low_1
Description: NF6629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6629_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 19 - 642
Target Start/End: Complemental strand, 7502976 - 7502349
Alignment:
| Q |
19 |
gaatctgtgtgtgtgtttgaagctcatctattgannnnnnnnn---actctttgttactgattgcatgcttggatatcactgtttttggaatgatgtcta |
115 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7502976 |
gaatctgtgtgtgtgtttgaagctcgtctattgattttttttttttactctttgttactgattgcatgcttggatatcactgtttttggaatgatgtcta |
7502877 |
T |
|
| Q |
116 |
nnnnnnn-agtcttgatcattcagtaatgtttcttatctgtaatttaattcaatactttgatatttctctcacgcctatcgaaccagacttcccttcaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7502876 |
ttttttttagtcttgatcattcagtaatgtttcttatctgtaatttaattcaatactttgatatttctctcacgcctttcgaaccagacttcccttcaag |
7502777 |
T |
|
| Q |
215 |
atggatgtggaacatgtgaaggcgaagatctcagtttggtggaacattaacgactgtaaatttccaacaaaccccgagtatgttaaaaccattgctaaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7502776 |
atggatgtggaacatgtgaaggcgaagatctcagtttggtggaacattaacgactgtaaatttccaacaaaccccgagtatgttaaaaccattgctaaca |
7502677 |
T |
|
| Q |
315 |
acattcgcttagctctgtcgaaagcaaaccttcttggagaactttccatttcagcttacggagacaccaatctcatcgccagtgaaattctaaacgcgct |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7502676 |
acattcgcttagctctgtcgaaagcaaaccttcttggagaactttccatttcagcttacggagacaccaatctcatcgccagtgaaattctaaacgcgct |
7502577 |
T |
|
| Q |
415 |
ttcctccacaggcatctccgtccatcacgtcactagcgtctctgatagttactttgatgaatgttacaaaaagattattactgatatgtcactgtgggct |
514 |
Q |
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| T |
7502576 |
ttcctccacaggcatctccgtccatcacgtcactagcgtctctgatagttactttgatgaatgttacaaaaagattattactgatatgtcactgtgggct |
7502477 |
T |
|
| Q |
515 |
ctagataaccctaatgctaatgttttgttgatatttgctaatggaggtaatgctgtaccaattatctcaagggctcttgttaaactttctatgaaaaacc |
614 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7502476 |
ctaggtaaccctaatgctaatgttttgttgatatttgctaatggaggtaatgctgtaccaattatctcaagggctcttgttaaactttctatgaaaaacc |
7502377 |
T |
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| Q |
615 |
acaacattctccttgctataccatcaca |
642 |
Q |
| |
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| T |
7502376 |
acaacattctccttgctataccatcaca |
7502349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 179 - 426
Target Start/End: Complemental strand, 7499477 - 7499231
Alignment:
| Q |
179 |
ttctctcacgcctatcgaaccagacttcccttcaagatggatgtggaacatgtgaa-ggcgaagatctcagtttggtggaacattaacgactgtaaattt |
277 |
Q |
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||||||||||||| |||||||||||||| ||| | ||| |||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||| || |
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| T |
7499477 |
ttctctcacgcctttcgaaccagacttc--ttcgaaatgaatgtggaatatgtgaaaggcgaagatctcagtttggtggaacattgatgactgtaaagtt |
7499380 |
T |
|
| Q |
278 |
ccaacaaaccccgagtatgttaaaaccattgctaacaacattcgcttagctctgtcgaaagcaaaccttcttggagaactttccatttcagcttacggag |
377 |
Q |
| |
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|||||||||| |||| |||| | |||| |||||||||||| ||||| |||| |||||| || |||| ||| ||| |||||||| | ||||| |||| |
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| T |
7499379 |
ccaacaaacctcgagagcgttaccaacatttctaacaacattcccttagtcctgttgaaagccaaacttcatggcgaaatttccattacggcttatggag |
7499280 |
T |
|
| Q |
378 |
acaccaatctcatcgccagtgaaattctaaacgcgctttcctccacagg |
426 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
7499279 |
acaccaatctcatctccagtgaaattctaaacggtatttcctccacagg |
7499231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 8139339 - 8139389
Alignment:
| Q |
64 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct |
114 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
8139339 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaatgatgtct |
8139389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 7499585 - 7499537
Alignment:
| Q |
64 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgt |
112 |
Q |
| |
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||||||||||||| |||||||||| | |||||||||||||||||||||| |
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| T |
7499585 |
tctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgt |
7499537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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