View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6629_low_10 (Length: 228)
Name: NF6629_low_10
Description: NF6629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6629_low_10 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 14226276 - 14226503
Alignment:
| Q |
1 |
tcatcatgtagtccttccaaacaatatttttgggatcaaagttaaatgtcgtgtctacaactctctttgctaccattcgtagcttttccacattctggtc |
100 |
Q |
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| T |
14226276 |
tcatcatgtagtccttccaaacaatatttttgggatcaaagttaaatgtcgtgtctacaactctctttgctaccattcgtagcttttccacattctggtc |
14226375 |
T |
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| Q |
101 |
gtcaaagctgtgctcacaaaattgtatatatttcagtgtgataaaatattcatagaatcttacctataataacagatagaagattatacatgccatcact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||| ||||||||||||||||| |
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| T |
14226376 |
atcaaagctgtgctcacaaaattgtatatatttcagtgtgatcaaatattcatagaatatcacgtataataacagatagaagtttatacatgccatcact |
14226475 |
T |
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| Q |
201 |
aaaggttaaattaggaaaagaattgaaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
14226476 |
aaaggttaaattaggaaaagaattgaaa |
14226503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 14220589 - 14220764
Alignment:
| Q |
1 |
tcatcatgtagtccttccaaacaatatttttgggatcaaagttaaatgtcgtgtctacaactctctttgctaccattcgtagcttttccacattctggtc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||| | ||||| ||||||||||||||||| |||||| |||||| ||||||||||| |
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| T |
14220589 |
tcatcatgtagtccttccaatcaatatttttgggatctaagttaaatgccttgtctgcaactctctttgctaccgttcgtaacttttctacattctggtc |
14220688 |
T |
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| Q |
101 |
gtcaaagctgtgctcacaaaattgtatatatttcagtgtgataaaatattcatagaatcttacctataataacaga |
176 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||| ||||||||||||| |
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| T |
14220689 |
gtcaaagctgtgctcacaaaattatatatatttcaatgtgataaaattttactagaatcttatctataataacaga |
14220764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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