View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6629_low_2 (Length: 625)
Name: NF6629_low_2
Description: NF6629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6629_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 2220618 - 2220983
Alignment:
| Q |
19 |
tgtagtagaaaggagtacaagtggagcaaatatttacataattctaggacatgaatcatctcaagatcaaataatggtggcacaatcataaataatgatc |
118 |
Q |
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| T |
2220618 |
tgtagtagaaaggagtacaagtggagcaaatatttacataattctaggacatgaatcatctcaagatcaaataatggtggcacaatcataaataatgatc |
2220717 |
T |
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| Q |
119 |
ttctcatggaggaatcaaaaccgttcatgcaacaagtttccttccatgttactagtttggtcgtaatatttttcgtcnnnnnnnnntgtttttaatattt |
218 |
Q |
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| T |
2220718 |
ttctcatggaggaatcaaaaccattcatacaacaagtttccttccatgttactagtttggtcgtaatatttttcgtc-aaaaaaaatgtttttaaaattt |
2220816 |
T |
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| Q |
219 |
cataaatatacaagcacttcaaacaaattctctatgcaacaatatgtttaaaactaaatcaattatgctcaaatgattctcaaagaaccactaatctagt |
318 |
Q |
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| T |
2220817 |
cataaatatacaagcacttcaaacaaattctctatgcaacaatatgtttaaaactaaatcaattatgctcaaatgattctcaaagaaccactaatctagt |
2220916 |
T |
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| Q |
319 |
tggaattagttgaggaataacaaaacnnnnnnnnngtataatttgagctttaatcatccactcacatact |
388 |
Q |
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| T |
2220917 |
tggaattagttgaggaataacaaa---caaaaaaagtataatttgagctttaatcatccactcacatact |
2220983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 441 - 607
Target Start/End: Original strand, 2221036 - 2221202
Alignment:
| Q |
441 |
cataaccagctataacatctactaattgaaggaataaaggggtagtataagcatattatgcaccaacaatcccttagcactttctactccnnnnnnnntc |
540 |
Q |
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| T |
2221036 |
cataaccagctataacatctactaattgaaggaataaagtggtagcataagcatattatgcaccaacaatcccttagcactttctactccaaaaaaaatc |
2221135 |
T |
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| Q |
541 |
aactttattaatcttcatcttcttttattccaccatgaacaacatcacattctctatttctctttac |
607 |
Q |
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| T |
2221136 |
aactttattaatcttcatcttcttttattccaccatgaacaacatcacattctctatttctctttac |
2221202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 328
Target Start/End: Complemental strand, 2219468 - 2219440
Alignment:
| Q |
300 |
aaagaaccactaatctagttggaattagt |
328 |
Q |
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| T |
2219468 |
aaagaaccactaatctagttggaattagt |
2219440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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