View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6629_low_6 (Length: 315)
Name: NF6629_low_6
Description: NF6629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6629_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 43073543 - 43073826
Alignment:
| Q |
14 |
agacatcatggagctgaaggatcatttgagagcaagaatcagttatatcatttttgtgctctgaactagctcccaggattattgacttcttgtgtccatt |
113 |
Q |
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| T |
43073543 |
agacatcatggagctgaaggatcatttgagagcaagaatcagttatatcatttttgtgctctgaactagctcccaggattgttgacttcttgtgtccatt |
43073642 |
T |
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| Q |
114 |
agcacagtcaccagcaaacctcggaaaaccccataattttcggcctatgcaggtgcagtaacatagttaattacacaaagaggaagagtgaaggttcaaa |
213 |
Q |
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| T |
43073643 |
agcacagtcaccagcaaacctcggaaaaccccataattttcggcctatgcaggtgcagtaacatagttaattacacaaagagtaagagtgaaggttcaaa |
43073742 |
T |
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| Q |
214 |
taaacgaataacaaggtccaaagtcttcaagaatcaagaaagttaaatcaaaccatgtcatcctacaacctttatgttcagact |
297 |
Q |
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| T |
43073743 |
taaacgaataacaaggtccaaagtcttcaagaatcaagaaagttaaatcaaaccatgtcatcctacaacctttatgttcagact |
43073826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 5380032 - 5379983
Alignment:
| Q |
14 |
agacatcatggagctgaaggatcatttgagagcaagaatcagttatatca |
63 |
Q |
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| T |
5380032 |
agacatcatggagctgaaggatcatctgagagcaagaatcagtgatatca |
5379983 |
T |
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