View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6629_low_9 (Length: 243)
Name: NF6629_low_9
Description: NF6629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6629_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 14226711 - 14226925
Alignment:
| Q |
16 |
agaatcaacttgttgttgctccggcaacacccaaacaagtggaatatgagcccttggtttggcttggtgggagagtgggagcaagatccaatgtttgttc |
115 |
Q |
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| T |
14226711 |
agaatcaacttgttgttgctccggcaacacccaaacaagtggaaaaagagcccttggtttggcttcgcgggagggtaggagcaagatccaatgttggttt |
14226810 |
T |
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| Q |
116 |
gtgttatatatagaagctgagaacaagtctcacattgcaaatgaatgagtagaatattggattaataagagagatgtctcgttaacctaatgtcttaagg |
215 |
Q |
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| T |
14226811 |
gtgttatatatagaagctgagaacaagtctcacgtcgcaaatgaatgagtacagtattggatttataagagagatgtctcgttaacctaatgtcttaaga |
14226910 |
T |
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| Q |
216 |
ttttggatagagatg |
230 |
Q |
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| T |
14226911 |
ttttggatagagatg |
14226925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 14221232 - 14221338
Alignment:
| Q |
124 |
tatagaagctgagaacaagtctcacattgcaaatgaatgagtagaatattggattaataagagagatgtctcgttaacctaatgtcttaaggttttggat |
223 |
Q |
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| T |
14221232 |
tataggaggtgagaacaagtctcacatcgcatatgaatgagtgcaatgttggatttataagagaggtgactcattaatctaatgtattaaggttttggat |
14221331 |
T |
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| Q |
224 |
agagatg |
230 |
Q |
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| T |
14221332 |
ggagatg |
14221338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 14221698 - 14221794
Alignment:
| Q |
124 |
tatagaagctgagaacaagtctcacattgcaaatgaatgagtagaatattggattaataagagagatgtctcgttaacctaatgtcttaaggttttg |
220 |
Q |
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| T |
14221698 |
tataggaggtgagaacaagtctcacatcacatatgaaggagtacaatgttgaatttattaaagagatgactcattaacctaatacattaaggttttg |
14221794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 2954484 - 2954443
Alignment:
| Q |
63 |
gagcccttggtttggcttggtgggagagtgggagcaagatcc |
104 |
Q |
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| T |
2954484 |
gagcccttggttaggctcggtgggggagtgggagcaagatcc |
2954443 |
T |
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