View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6630_high_19 (Length: 208)

Name: NF6630_high_19
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6630_high_19
NF6630_high_19
[»] chr1 (5 HSPs)
chr1 (13-190)||(34976579-34976756)
chr1 (18-190)||(34983689-34983864)
chr1 (13-190)||(2304569-2304744)
chr1 (58-106)||(34990473-34990521)
chr1 (141-190)||(34990583-34990632)
[»] chr5 (1 HSPs)
chr5 (13-190)||(40581136-40581313)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 34976579 - 34976756
Alignment:
Q  13 agcataggacactgaaggtgcttgattttaaaggtgcattgtttattgattttaaaccttttagaagtctgatccacttgaaatatctaagcttcaaaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34976579 agcataggacactgaaggtgcttgattttaaaggtgcattgtttattgattttaaaccttttagaagtctgatccacttgaaatatttaagcttcaaaaa 34976678  T
Q  113 tttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctggagactttggatctaag 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34976679 tttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctggagactttggatctaag 34976756  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 34983689 - 34983864
Alignment:
Q  18 aggacactgaaggtgcttgattttaaaggtgc---attgtttattgattttaaaccttttagaagtctgatccacttgaaatatctaagcttcaaaaatt 114  Q
    |||||||||||||||||||||||| ||| |||   ||| ||||  ||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  34983689 aggacactgaaggtgcttgattttcaagatgccagattttttagggatcttaaacattttagaagtctgatccacttgaaatatttaagcttcaagaatt 34983788  T
Q  115 tatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctggagactttggatctaag 190  Q
    ||| ||||| ||  | ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  34983789 tatacatacaacatagccaacatggatttcccaaatggattggtattctcctaaatctggagaccttggatctaag 34983864  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 2304744 - 2304569
Alignment:
Q  13 agcataggacactgaaggtgcttgattttaaaggtgc---attgtttattgattttaaaccttttagaagtctgatccacttgaaatatctaagcttcaa 109  Q
    |||| |||||||||||||||||||||||| ||| |||   |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||  ||    
T  2304744 agcacaggacactgaaggtgcttgattttcaagatgccaaattgtttattgattttgaaccttttagaagtctgttccacttgaaatatttaagct--aa 2304647  T
Q  110 aaatttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctggagactttggatctaag 190  Q
     ||| |||||    ||| | ||||| |||   ||||||||||||||||| |||| | |||||||||||| |||||||||||    
T  2304646 gaatatatcc---ggactataccaaaatgtacttcccaaatggattggtcttcttctaaatctggagaccttggatctaag 2304569  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 34990473 - 34990521
Alignment:
Q  58 ttgattttaaaccttttagaagtctgatccacttgaaatatctaagctt 106  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34990473 ttgattataaaccttttagatgtctgatccacttgaaatatctaagctt 34990521  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 34990583 - 34990632
Alignment:
Q  141 tttcccaaatggattggtattctccaaaatctggagactttggatctaag 190  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  34990583 tttcccaaatggattggtattctcctaaatcttgagaccttggatctaag 34990632  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 40581136 - 40581313
Alignment:
Q  13 agcataggacactgaaggtgcttgattttaaaggtg---cattgtttattgattttaaaccttttagaagtctgatccacttgaaatatctaagcttcaa 109  Q
    |||| |||||||||||||||||||||||| ||| ||   ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  40581136 agcacaggacactgaaggtgcttgattttcaagatgactcattgattattgattttaaacattttagaagtctggtccacttgaaatatttaagcttcaa 40581235  T
Q  110 aaatttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctggagactttggatctaag 190  Q
     | |  ||||  || ||   ||||| |||   ||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  40581236 gattagatccgaacaac---accaaaatgtacttcccaaatggattggtcttctcctaaatctggagaccttggatctaag 40581313  T

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