View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6630_high_4 (Length: 398)
Name: NF6630_high_4
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 390
Target Start/End: Complemental strand, 54638410 - 54638026
Alignment:
| Q |
6 |
ataaacaatgaagatattcatatcatatagtaaataatgaagatatttttgagtttttgaatgtaccttaacatttcctgcttctttgatggcagagatg |
105 |
Q |
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| T |
54638410 |
ataaacaatgaagatattcatatcatatagtaaataatgaagatatttttgagtttttgaatgtaccttaacatttcctgcttctttgatggcagagatg |
54638311 |
T |
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| Q |
106 |
attttatcttgatcactcaagtgcgagcgagccacagtacaaattacaacatcaacctgttttattgctttcaccaaactttgatgatcatatagatccc |
205 |
Q |
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| T |
54638310 |
attttatcttgatcactcaagtgcgagcgagccacagtagaaattacaacatcaacctgttttattgctttcaccaaactttgatgatcatatagatccc |
54638211 |
T |
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| Q |
206 |
cctgcatataacacactgaatatcatatccggacactcaaaatttgacatggatactaaaatatctctaaattattacactaagataatttgaccaatat |
305 |
Q |
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| T |
54638210 |
cctgcatataacacactgaatatcatatccggacactcaaaatttgacatggatactaaaatatctctaaattattacactaagataatttgaccaatat |
54638111 |
T |
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| Q |
306 |
aaaaagttaagcgtgaccagaaaagaataggatctgacgcacaagaacaaaattgacggacaagtccttgaatttgttgatgatg |
390 |
Q |
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| T |
54638110 |
aaaaagttaagcgtgaccagaaaagaataggatttgacgcacaagaacaaaattgacggacaagtccttgaatttgttgatgatg |
54638026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 26513862 - 26513812
Alignment:
| Q |
69 |
taccttaacatttcctgcttctttgatggcagagatgattttatcttgatc |
119 |
Q |
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| T |
26513862 |
taccttaacatttccagcttctttgatggctgaaatgatcttatattgatc |
26513812 |
T |
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