View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6630_high_8 (Length: 325)
Name: NF6630_high_8
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 52 - 306
Target Start/End: Complemental strand, 45622763 - 45622510
Alignment:
| Q |
52 |
gtgggaaaaaagatcacaaaacattttagttctaaaacagccacgcctgaaaacgtaccataaagtaaaaacacaatccaaaatttcttatgaataggac |
151 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45622763 |
gtgggaaaaaagatcacaaa-cattttagttctaaaatagctacgcctgaaaacgtaccataaagtaaaaacacaatccaaaatttcttatgaataggac |
45622665 |
T |
|
| Q |
152 |
cacattactataagggacaatttttatttcattaatcctgccggaagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaa |
251 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
45622664 |
cacataactataagggacaatttttatttcattaatcctgccggaagaaaaaacagaaaaacattaacaattttattctccataatgaatagctgcaaaa |
45622565 |
T |
|
| Q |
252 |
tccagtatgagaatagacgggcaatgacgacaggaccccttggtcagtttggcca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
45622564 |
tccagtatgagaatagacgggcaatgacgacaggacccctttgtcaatttggcca |
45622510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 45622811 - 45622782
Alignment:
| Q |
9 |
gaaatgaataaaacaataaaaagatcacaa |
38 |
Q |
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| T |
45622811 |
gaaatgaataaaacaataaaaagatcacaa |
45622782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 52 - 306
Target Start/End: Complemental strand, 22604284 - 22604030
Alignment:
| Q |
52 |
gtgggaaaaaagatcacaaaacattttagttctaaaacagccacgcctgaaaacgtaccataaagtaaaaacacaatccaaaatttcttatgaataggac |
151 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22604284 |
gtgggaaaaaagatcacaaa-cattttagttctaaaatagctacgcctaaaaacgtaccataaagtaaaaacacgatccaaaatttcttatgaataggac |
22604186 |
T |
|
| Q |
152 |
cacattactataagggacaatttttatttcattaatcctgccggaagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaa |
251 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22604185 |
cacataactataagggacaatttttatttcattaatcctgccagaagaaaaaacagaaaaacattaccaattttactctccataatgaatagctgcaaaa |
22604086 |
T |
|
| Q |
252 |
tccagtatgagaatagacgggcaatgacgaca-ggaccccttggtcagtttggcca |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22604085 |
tccagtatgagaatagacgggcaatgacgacatggaccccttggtcagtttggcca |
22604030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 22604325 - 22604296
Alignment:
| Q |
9 |
gaaatgaataaaacaataaaaagatcacaa |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
22604325 |
gaaatgaataaaacaataaaaagatcacaa |
22604296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 52 - 302
Target Start/End: Original strand, 15213633 - 15213883
Alignment:
| Q |
52 |
gtgggaaaaaagatcacaaaacattttagttctaaaacagccacgcctgaaaacgtaccataaagtaaaaacacaatccaaaatttcttatgaataggac |
151 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |
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| T |
15213633 |
gtgggaaagaagatcacaaa-cattttagttctaaaatagctacgcctgaaaacgtaccataaagtcaaaacacgatccaaaatttcttatgaataagac |
15213731 |
T |
|
| Q |
152 |
cacattactataagggacaatttttatttcattaatcctgccggaagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaa |
251 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
15213732 |
cacataactataagggacaatttttatttcattaatcctgccggcagaaaaaacagaaaaacattactaattttactctccttaatgaatagctgcaaaa |
15213831 |
T |
|
| Q |
252 |
tccagtatgagaatagacgggcaatgacgaca-ggaccccttggtcagtttg |
302 |
Q |
| |
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||||||||||||||||||||| ||||| |||| |||||||||||||| |||| |
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| T |
15213832 |
tccagtatgagaatagacgggaaatgaggacatggaccccttggtcaatttg |
15213883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 52 - 302
Target Start/End: Original strand, 15252852 - 15253102
Alignment:
| Q |
52 |
gtgggaaaaaagatcacaaaacattttagttctaaaacagccacgcctgaaaacgtaccataaagtaaaaacacaatccaaaatttcttatgaataggac |
151 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |
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| T |
15252852 |
gtgggaaagaagatcacaaa-cattttagttctaaaatagctacgcctgaaaacgtaccataaagtcaaaacacgatccaaaatttcttatgaataagac |
15252950 |
T |
|
| Q |
152 |
cacattactataagggacaatttttatttcattaatcctgccggaagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaa |
251 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
15252951 |
cacataactataagggacaatttttatttcattaatcctgccggcagaaaaaacagaaaaacattactaattttactctccttaatgaatagctgcaaaa |
15253050 |
T |
|
| Q |
252 |
tccagtatgagaatagacgggcaatgacgaca-ggaccccttggtcagtttg |
302 |
Q |
| |
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||||||||||||||||||||| ||||| |||| |||||||||||||| |||| |
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| T |
15253051 |
tccagtatgagaatagacgggaaatgaggacatggaccccttggtcaatttg |
15253102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 22840011 - 22840163
Alignment:
| Q |
160 |
tataagggacaatttttatttcattaatcctgccggaagaaaaaatagaaaaacat-------taccaattttactctctataatgaatagctgcaaaat |
252 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |||||| | ||||| | ||||||||||||||| |||||| ||||||||||||| |
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| T |
22840011 |
tataagggacaatttttgtttcattaaacctgccggaaaaaaaaaaaaaaaaaactgaaattttaccaattttactctacataatgtatagctgcaaaat |
22840110 |
T |
|
| Q |
253 |
ccagtatgagaatagacgggcaatgacgaca-ggaccccttggtcagtttggc |
304 |
Q |
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|
||||||||||||||| ||||||||||||| ||| | |||||||| |||||| |
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|
| T |
22840111 |
ttagtatgagaatagaccggcaatgacgacatggatcacttggtcactttggc |
22840163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 20188824 - 20188768
Alignment:
| Q |
216 |
taccaattttactctctataatgaatagctgcaaaatccagtatgagaatagacggg |
272 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20188824 |
taccaattttactctccataatgaatagctgcaaaatccagtatgagaatagacggg |
20188768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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