View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6630_low_1 (Length: 535)
Name: NF6630_low_1
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_low_1 |
 | |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Original strand, 95954 - 96456
Alignment:
| Q |
15 |
tcagtgacaagaaacttgcttctggggattcagtcgtgtttttgagatctgaaaacggcgaactacgtgttggaattcggagggaaaaaaggcgaaataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
95954 |
tcagtgacaagaaacttgcttctggggattcagtcgtgtttttgagatctgaaaacggcgaactacgtgttggaatttggagggaaaaaaggcgaaataa |
96053 |
T |
|
| Q |
115 |
tgttggagtcgtcagggtggaaatatggtagtggaattggaatttgtcctgcgccaccttacggaggatttacatcgttttcagaagaggaagataataa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
96054 |
tgttggagtcgtcagggtggaaatatggtagtggaattggaatttgtcctgcgccaccttacggaggatttacatcgttttcagaagaggaagataataa |
96153 |
T |
|
| Q |
215 |
acttagaagaaatggtaaaggcaatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
96154 |
acttagaagaaatggtaaaggcaatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactc |
96253 |
T |
|
| Q |
315 |
ggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagatta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
96254 |
ggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatcacacttcagatta |
96353 |
T |
|
| Q |
415 |
ggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctga |
514 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
96354 |
ggtggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgtgcaggctgctga |
96453 |
T |
|
| Q |
515 |
tcc |
517 |
Q |
| |
|
||| |
|
|
| T |
96454 |
tcc |
96456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Original strand, 87938 - 88448
Alignment:
| Q |
15 |
tcagtgacaagaaacttgcttctggggattcagtcgtgtttttgagatctgaaaacggcgaactacgtgttggaattcggagggaaaaaaggcgaaataa |
114 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||||| || | ||||||||||||||||| |||||||||||||| |
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|
| T |
87938 |
tcagcgacaagaaacttgcgtctggggattcgattgtgtttttgagatctgaaaacggcgatcttcatgttggaattcggagggctaaaaggcgaaataa |
88037 |
T |
|
| Q |
115 |
tgttggagtcg--------tcagggtggaaatatggtagtggaattggaatttgtcctgcgccaccttacggaggatttacatcgttttcagaagaggaa |
206 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
88038 |
tgttggagtcgatcctttgtcagggtggaaatctggtagtggaattggaatttgtgctgcaccaccttacggaggatttccatcgttttcgggagaggaa |
88137 |
T |
|
| Q |
207 |
gataataaacttagaagaaatggtaaaggcaatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcag |
306 |
Q |
| |
|
|||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
88138 |
gataataaacttcgaagaaacggtaaaggtaatggattgctaataagtgatggaatgatgggtagggggaaggtgaaagctctagaagttattgaagcag |
88237 |
T |
|
| Q |
307 |
taagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
88238 |
taagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcact |
88337 |
T |
|
| Q |
407 |
tcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcag |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88338 |
tcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcag |
88437 |
T |
|
| Q |
507 |
gctgctgatcc |
517 |
Q |
| |
|
||||||||||| |
|
|
| T |
88438 |
gctgctgatcc |
88448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Complemental strand, 40870328 - 40869826
Alignment:
| Q |
15 |
tcagtgacaagaaacttgcttctggggattcagtcgtgtttttgagatctgaaaacggcgaactacgtgttggaattcggagggaaaaaaggcgaaataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40870328 |
tcagtgacaagaaacttgcttctggggattcagtcgtgtttttgagatctgaaaacggcgaactacgtgttggaatttggagggaaaaaaggcgaaataa |
40870229 |
T |
|
| Q |
115 |
tgttggagtcgtcagggtggaaatatggtagtggaattggaatttgtcctgcgccaccttacggaggatttacatcgttttcagaagaggaagataataa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870228 |
tgttggagtcgtcagggtggaaatatggtagtggaattggaatttgtcctgcgccaccttacggaggatttacatcgttttcagaagaggaagataataa |
40870129 |
T |
|
| Q |
215 |
acttagaagaaatggtaaaggcaatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870128 |
acttagaagaaatggtaaaggcaatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcagtaagactc |
40870029 |
T |
|
| Q |
315 |
ggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcacttcagatta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40870028 |
ggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatcacacttcagatta |
40869929 |
T |
|
| Q |
415 |
ggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctga |
514 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40869928 |
ggtggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgtgcaggctgctga |
40869829 |
T |
|
| Q |
515 |
tcc |
517 |
Q |
| |
|
||| |
|
|
| T |
40869828 |
tcc |
40869826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Complemental strand, 40878345 - 40877835
Alignment:
| Q |
15 |
tcagtgacaagaaacttgcttctggggattcagtcgtgtttttgagatctgaaaacggcgaactacgtgttggaattcggagggaaaaaaggcgaaataa |
114 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||||| || | ||||||||||||||||| |||||||||||||| |
|
|
| T |
40878345 |
tcagcgacaagaaacttgcgtctggggattcgattgtgtttttgagatctgaaaacggcgatcttcatgttggaattcggagggctaaaaggcgaaataa |
40878246 |
T |
|
| Q |
115 |
tgttggagtcg--------tcagggtggaaatatggtagtggaattggaatttgtcctgcgccaccttacggaggatttacatcgttttcagaagaggaa |
206 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
40878245 |
tgttggagtcgatcctttgtcagggtggaaatctggtagtggaattggaatttgtgctgcaccaccttacggaggatttccatcgttttcgggagaggaa |
40878146 |
T |
|
| Q |
207 |
gataataaacttagaagaaatggtaaaggcaatggattactaataagtgatggaatgatgggtagggggaaggtgaaagttctagaagttattgaagcag |
306 |
Q |
| |
|
|||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40878145 |
gataataaacttcgaagaaacggtaaaggtaatggattgctaataagtgatggaatgatgggtagggggaaggtgaaagctctagaagttattgaagcag |
40878046 |
T |
|
| Q |
307 |
taagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878045 |
taagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattggaatggcact |
40877946 |
T |
|
| Q |
407 |
tcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcag |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877945 |
tcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcag |
40877846 |
T |
|
| Q |
507 |
gctgctgatcc |
517 |
Q |
| |
|
||||||||||| |
|
|
| T |
40877845 |
gctgctgatcc |
40877835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 518
Target Start/End: Original strand, 21716267 - 21716368
Alignment:
| Q |
417 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatc |
516 |
Q |
| |
|
|||||| |||| ||||||||||||||| || ||||||| || ||||| || ||||| ||||||||||| ||||| | ||||||||||||| || ||||| |
|
|
| T |
21716267 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttctgttcaggttgttgatc |
21716366 |
T |
|
| Q |
517 |
ct |
518 |
Q |
| |
|
|| |
|
|
| T |
21716367 |
ct |
21716368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 489
Target Start/End: Original strand, 28347335 - 28347416
Alignment:
| Q |
408 |
cagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaa |
489 |
Q |
| |
|
|||||| | |||||| ||||||| || |||||||||||| ||||||||||||| || || | |||||||||||||| |||| |
|
|
| T |
28347335 |
cagattcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaa |
28347416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 42730737 - 42730825
Alignment:
| Q |
417 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
505 |
Q |
| |
|
|||||| |||| ||||| ||||| ||| | ||||||| ||||| || || ||||| ||||||||||| |||||| || |||||||||| |
|
|
| T |
42730737 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
42730825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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