View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6630_low_10 (Length: 321)
Name: NF6630_low_10
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 39285999 - 39286151
Alignment:
| Q |
19 |
ataaatgtggtggtgggtgccacgttttagatctactcaggtccatgtacaacaacctacacgtacaacgaatatatatcaagaaagggaataaatacta |
118 |
Q |
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| T |
39285999 |
ataaatgtggtggtgggtgccacgttttagatctactcaggtccatgtacaacaacctacatgtacaacgaatatatatcaagaaagtgaataaatacta |
39286098 |
T |
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| Q |
119 |
acaatcttctactattctctcctaaaaaacaaatttctactattctgtctttg |
171 |
Q |
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| T |
39286099 |
acaatcttctactattctctcctaaaaaacaaatttctactattctgtctttg |
39286151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 39286196 - 39286287
Alignment:
| Q |
216 |
gaagtacttctgcatgttgtcctgaggttagcatagtttgttaacatggagtgtattttcccaagaatcgaactcgtgttacagttgatatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39286196 |
gaagtacttctgcatgttgtcctgaggttagcatagtttgttaacatggagtgtattttcccaaagatcgaactcgtgttacagttgatatt |
39286287 |
T |
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