View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6630_low_11 (Length: 302)

Name: NF6630_low_11
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6630_low_11
NF6630_low_11
[»] chr2 (3 HSPs)
chr2 (16-289)||(1747344-1747637)
chr2 (154-191)||(31899459-31899496)
chr2 (148-194)||(40357336-40357382)
[»] chr5 (1 HSPs)
chr5 (204-289)||(7912946-7913031)
[»] chr1 (2 HSPs)
chr1 (158-195)||(17688211-17688248)
chr1 (148-188)||(51246729-51246769)
[»] chr4 (2 HSPs)
chr4 (148-188)||(43031554-43031594)
chr4 (145-193)||(38365899-38365947)
[»] chr6 (1 HSPs)
chr6 (158-191)||(26574566-26574599)
[»] chr7 (1 HSPs)
chr7 (148-188)||(36747171-36747211)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 1747637 - 1747344
Alignment:
Q  16 atgaaagaagaatcaacagttcaaatggagtatttatcttctattgattatcaactctgagtatcaagggatttctctcaccgccttcaacctaatct-- 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1747637 atgaaagaagaatcaacagttcaaatggagtatttatcttctattgattatcaactctgagtatcaagggatttctctcaccgccttcaacctaatctct 1747538  T
Q  114 -----ctcaccgtctcatcccctatattctccaccctctaaaacactctcctcccctcacctccaaactctcaaacaaagtctta-------------aa 195  Q
         |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||             ||    
T  1747537 caagtctcaccgtctcatcccctatattctccaccctctgaaacactctcatcccctcatctccaaactctcaaacaaagtcttagtatttaaaaaacaa 1747438  T
Q  196 taatattttgtctagtggatcattttatttttgctcttttaggtccattttactaaacctggagtcgagctccaccatgttggcatcagtggtg 289  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  1747437 taatattttatctagtggatcattttatttttgctcttttaggtctattttactaaacctggagtcgagctccaccatgttggcattagtggtg 1747344  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 31899459 - 31899496
Alignment:
Q  154 ctctcctcccctcacctccaaactctcaaacaaagtct 191  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  31899459 ctctcctcccctcccctccaaactctcaaacaaagtct 31899496  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 40357382 - 40357336
Alignment:
Q  148 aaaacactctcctcccctcacctccaaactctcaaacaaagtcttaa 194  Q
    ||||||||||||||||||| | |||||||| |||||||||| |||||    
T  40357382 aaaacactctcctcccctcccatccaaactatcaaacaaagccttaa 40357336  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 7913031 - 7912946
Alignment:
Q  204 tgtctagtggatcattttatttttgctcttttaggtccattttactaaacctggagtcgagctccaccatgttggcatcagtggtg 289  Q
    |||||||| |||| || | ||| ||||||||||||  |||||| ||||| ||  | |||||||||||||||||||||| |||||||    
T  7913031 tgtctagttgatccttctttttctgctcttttaggctcattttgctaaatctataatcgagctccaccatgttggcattagtggtg 7912946  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 17688248 - 17688211
Alignment:
Q  158 cctcccctcacctccaaactctcaaacaaagtcttaaa 195  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  17688248 cctcccctcccctccaaactctcaaacaaagtcttaaa 17688211  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 51246729 - 51246769
Alignment:
Q  148 aaaacactctcctcccctcacctccaaactctcaaacaaag 188  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  51246729 aaaaccctctcctcccctcccctccaaactcccaaacaaag 51246769  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 43031594 - 43031554
Alignment:
Q  148 aaaacactctcctcccctcacctccaaactctcaaacaaag 188  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  43031594 aaaacactcccctcccctcccctccaaactctcaaacaaag 43031554  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 38365947 - 38365899
Alignment:
Q  145 tctaaaacactctcctcccctcacctccaaactctcaaacaaagtctta 193  Q
    |||||||| ||| ||||||||| ||||||||||| ||||||||| ||||    
T  38365947 tctaaaactctcccctcccctcccctccaaactcccaaacaaagcctta 38365899  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 26574566 - 26574599
Alignment:
Q  158 cctcccctcacctccaaactctcaaacaaagtct 191  Q
    ||||||||| ||||||||||||||||||||||||    
T  26574566 cctcccctcccctccaaactctcaaacaaagtct 26574599  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 36747211 - 36747171
Alignment:
Q  148 aaaacactctcctcccctcacctccaaactctcaaacaaag 188  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  36747211 aaaaccctcccctcccctcccctccaaactctcaaacaaag 36747171  T

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