View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6630_low_15 (Length: 250)

Name: NF6630_low_15
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6630_low_15
NF6630_low_15
[»] chr8 (9 HSPs)
chr8 (1-250)||(7458419-7458668)
chr8 (5-250)||(7470825-7471070)
chr8 (150-231)||(6351745-6351826)
chr8 (135-231)||(6362663-6362759)
chr8 (147-217)||(6409677-6409747)
chr8 (148-216)||(6390473-6390541)
chr8 (168-231)||(6369544-6369607)
chr8 (146-210)||(6274003-6274067)
chr8 (159-231)||(6423598-6423670)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 7458419 - 7458668
Alignment:
Q  1 gttagttagagtttgttattagggcgttacttcattgatttgtagttattaccactgagaatcttagatggcacctcatgaacattnnnnnnntatgttt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  7458419 gttagttagagtttgttattagggcgttacttcgttgatttgtagttattaccactgagaatcttagatggcacctcatgaacattaaaaaaatatgttt 7458518  T
Q  101 tagatcaatatctttttnnnnnnntggaccgacccaagatgtatggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaat 200  Q
    |||||||||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7458519 tagatcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcggtgaaat 7458618  T
Q  201 tccaatccttgtaaacaacagctgacatttcaacagaataatctacccac 250  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  7458619 tccaatccttgtaaacaacagcagacatttcaacagcataatctccccac 7458668  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 7470825 - 7471070
Alignment:
Q  5 gttagagtttgttattagggcgttacttcattgatttgtagttattaccactgagaatcttagatggcacctcatgaacattnnnnnnntatgttttaga 104  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||    
T  7470825 gttaaagtttgttattagggcgttacttcgttgatttgtagttattaccactgagaatcttagatggcacctcatgaatattaaaaaaatatgttttaga 7470924  T
Q  105 tcaatatctttttnnnnnnntggaccgacccaagatgtatggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattcca 204  Q
    |||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7470925 tcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattcca 7471024  T
Q  205 atccttgtaaacaacagctgacatttcaacagaataatctacccac 250  Q
    |||||||||||||||||| |||||||| |||| ||||||| |||||    
T  7471025 atccttgtaaacaacagcagacatttcgacagcataatctccccac 7471070  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 6351745 - 6351826
Alignment:
Q  150 tgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc 231  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  6351745 tgtaaggttaccttttgattagatcgttaggtagtccttgctcaatgaaattccaatccttgtaaacaacagcagacatttc 6351826  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 6362663 - 6362759
Alignment:
Q  135 caagatgtatggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc 231  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||||||| ||||  ||||||||    
T  6362663 caagatgtaatgttttgtaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttc 6362759  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 6409677 - 6409747
Alignment:
Q  147 ttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaaca 217  Q
    ||||||||| |||||||||||||||||||||||| ||| |||| || | ||||  ||||||||||||||||    
T  6409677 ttttgtaagcttaccttttgattagatcattaggtagtgcttgatccgggaaaacccaatccttgtaaaca 6409747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 6390473 - 6390541
Alignment:
Q  148 tttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaac 216  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||   ||||  |||||||||||||||    
T  6390473 tttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatccttgtaaac 6390541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 6369544 - 6369607
Alignment:
Q  168 ttagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc 231  Q
    |||||||| |||| |||||||  |||| ||||  ||||||||||||||||||||||||||||||    
T  6369544 ttagatcagtaggtagtccttcttcagcgaaaacccaatccttgtaaacaacagctgacatttc 6369607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 6274003 - 6274067
Alignment:
Q  146 gttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatcctt 210  Q
    ||||| |||||||||||||||| |||||||||||| |  ||||||||  | ||||||||||||||    
T  6274003 gttttttaaggttaccttttgagtagatcattaggcaaaccttgctctttaaaattccaatcctt 6274067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 6423598 - 6423670
Alignment:
Q  159 accttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagctgacatttc 231  Q
    ||||||||| |||||||||||| || |||||||||||||||  ||||||| | ||  ||||||| ||||||||    
T  6423598 accttttgagtagatcattaggtagcccttgctcagtgaaaacccaatccctatatgcaacagcagacatttc 6423670  T

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