View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6630_low_16 (Length: 250)

Name: NF6630_low_16
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6630_low_16
NF6630_low_16
[»] chr5 (5 HSPs)
chr5 (53-140)||(7992407-7992494)
chr5 (53-140)||(32325810-32325897)
chr5 (53-140)||(12904979-12905066)
chr5 (53-100)||(34641930-34641977)
chr5 (53-85)||(28827507-28827539)
[»] chr2 (7 HSPs)
chr2 (53-140)||(44673174-44673261)
chr2 (53-140)||(25438291-25438378)
chr2 (53-122)||(37154903-37154972)
chr2 (53-100)||(21006375-21006422)
chr2 (53-100)||(6536549-6536596)
chr2 (53-100)||(24132215-24132262)
chr2 (53-85)||(39574644-39574676)
[»] chr7 (5 HSPs)
chr7 (53-139)||(36167731-36167817)
chr7 (53-138)||(19886576-19886661)
chr7 (53-140)||(12859244-12859331)
chr7 (53-138)||(32775175-32775260)
chr7 (64-122)||(5465745-5465803)
[»] chr8 (9 HSPs)
chr8 (53-140)||(34784518-34784605)
chr8 (52-140)||(3117706-3117794)
chr8 (53-140)||(1548141-1548228)
chr8 (53-140)||(20900778-20900865)
chr8 (57-140)||(23033404-23033487)
chr8 (53-134)||(3277522-3277603)
chr8 (61-124)||(29168561-29168624)
chr8 (1-48)||(44113607-44113654)
chr8 (53-85)||(15657351-15657383)
[»] chr3 (5 HSPs)
chr3 (53-140)||(32130160-32130247)
chr3 (53-140)||(53208684-53208771)
chr3 (53-140)||(7322859-7322946)
chr3 (53-121)||(9454608-9454676)
chr3 (53-85)||(1915488-1915520)
[»] chr6 (1 HSPs)
chr6 (53-140)||(13425675-13425762)
[»] chr4 (7 HSPs)
chr4 (53-140)||(2588490-2588577)
chr4 (47-139)||(5650759-5650851)
chr4 (53-140)||(16497909-16497996)
chr4 (53-124)||(52249500-52249571)
chr4 (1-48)||(50016462-50016509)
chr4 (64-124)||(39599164-39599224)
chr4 (53-100)||(28075453-28075500)
[»] chr1 (1 HSPs)
chr1 (53-100)||(23963006-23963053)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 7992494 - 7992407
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7992494 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 7992407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 32325897 - 32325810
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32325897 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32325810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 12905066 - 12904979
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  12905066 gtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaacacatcgaccatgcttcgatcctacttacgaaccg 12904979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 34641977 - 34641930
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 100  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  34641977 gtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 34641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 28827507 - 28827539
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcg 85  Q
    |||| ||||||||||||||||||||||||||||    
T  28827507 gtagacaggaacgagtcccagcacgtaggatcg 28827539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 44673174 - 44673261
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44673174 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 44673261  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 25438291 - 25438378
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25438291 gtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcgaccgtgctttgatcctacttacgaaccg 25438378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 37154972 - 37154903
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 122  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||||||||  || ||||||||||||||    
T  37154972 gtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgccacgacatctcgaccgtgcttc 37154903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 21006422 - 21006375
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 100  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  21006422 gtagccaggatcgagtcccagcacgtaggatcgcacgatcttacgtgc 21006375  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 6536549 - 6536596
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 100  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  6536549 gtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 6536596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 24132215 - 24132262
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 100  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  24132215 gtagccaggatcgaatcccagcacgtaggatcgcacgatcttacgtgc 24132262  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 39574676 - 39574644
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcg 85  Q
    |||| ||||||||||||||||||||||||||||    
T  39574676 gtagacaggaacgagtcccagcacgtaggatcg 39574644  T

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Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 36167817 - 36167731
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36167817 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 36167731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 19886576 - 19886661
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 138  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19886576 gtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 19886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 12859331 - 12859244
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12859331 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 12859244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 32775175 - 32775260
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 138  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32775175 gtagtcaggaacgagtcccagcatgtaggatcacacgaccttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 32775260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 5465803 - 5465745
Alignment:
Q  64 cgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 122  Q
    ||||||||||  ||||||||| |||||| |||||||||||| | |||||||||||||||    
T  5465803 cgagtcccaggtcgtaggatcacacgattttacgtgccacatcccctcgaccgtgcttc 5465745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 34784605 - 34784518
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34784605 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacaaaccg 34784518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 3117706 - 3117794
Alignment:
Q  52 agtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3117706 agtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccg 3117794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 1548141 - 1548228
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1548141 gtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttcgatcctacttacgaaccg 1548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 20900778 - 20900865
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  20900778 gtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgactgtgcttcgatcctacttacaaaccg 20900865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 23033404 - 23033487
Alignment:
Q  57 tcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23033404 tcaggaacgagtcccagcatgtaggatcgcatgatcttacgtgccacaacacctcgaccgtgcttcgatcctacttacgaaccg 23033487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 3277522 - 3277603
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttac 134  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3277522 gtagtcaggaacgaatcccagcatgtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttcaatcctacttac 3277603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 29168624 - 29168561
Alignment:
Q  61 gaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 124  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29168624 gaacgactcccagctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcga 29168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44113654 - 44113607
Alignment:
Q  1 aactattgaaggtccacgggtctgggctgttccggtctgctatcagca 48  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||    
T  44113654 aactattgaagatcaacgggtctgggctgttccggtctgcaatcagca 44113607  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 15657351 - 15657383
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcg 85  Q
    |||||||||||||||||||||||||||||||||    
T  15657351 gtagtcaggaacgagtcccagcacgtaggatcg 15657383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 32130160 - 32130247
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32130160 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32130247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 53208771 - 53208684
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  53208771 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgtttcgatcctacttacaaaccg 53208684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 7322859 - 7322946
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  7322859 gtagccaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcagttctacttacgaaccg 7322946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 9454608 - 9454676
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 121  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9454608 gtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 9454676  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 1915488 - 1915520
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcg 85  Q
    |||| ||||||||||||||||||||||||||||    
T  1915488 gtagacaggaacgagtcccagcacgtaggatcg 1915520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 13425762 - 13425675
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13425762 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttatgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 13425675  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 2588577 - 2588490
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  2588577 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtacttcggtcctacttacgaaccg 2588490  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 5650851 - 5650759
Alignment:
Q  47 caataagtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 139  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5650851 caataggtagtcaggaacgagtccaagcacgtaggatcgcacaatctcacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 5650759  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 16497996 - 16497909
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 140  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||    
T  16497996 gtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 16497909  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 52249571 - 52249500
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 124  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52249571 gtagtcaggaatgagtcccagtacgtaggatcgcacgatcttacgtgccacagcacctctaccgtgcttcga 52249500  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50016509 - 50016462
Alignment:
Q  1 aactattgaaggtccacgggtctgggctgttccggtctgctatcagca 48  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||    
T  50016509 aactattgaagatctacgggtctgggctgttccggtctgcaatcagca 50016462  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 39599224 - 39599164
Alignment:
Q  64 cgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 124  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| |||||| |  |||||||||    
T  39599224 cgagtcccagctcgtaggatcacacgatcttacgttccacaacacctcaattgtgcttcga 39599164  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 28075453 - 28075500
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 100  Q
    |||| ||||| |||||||||||  ||||||||||||||||||||||||    
T  28075453 gtagccaggatcgagtcccagcttgtaggatcgcacgatcttacgtgc 28075500  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 23963053 - 23963006
Alignment:
Q  53 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 100  Q
    |||| ||||| || ||||||||||||||||||||| ||||||||||||    
T  23963053 gtagccaggatcgggtcccagcacgtaggatcgcatgatcttacgtgc 23963006  T

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