View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6630_low_18 (Length: 240)
Name: NF6630_low_18
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 51302546 - 51302762
Alignment:
| Q |
3 |
cttcaatagttctaatttaatttagtattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtgaacttgtgtatatttttccaaat |
102 |
Q |
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| T |
51302546 |
cttcaatagttctaatttaatttagtattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtgaacttgtgtatatttttccaaat |
51302645 |
T |
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| Q |
103 |
gcttgctgtttatgttttctgagggtaaaataatcgattaataatgacttttttccagggtacgagactaatgtaataattgaataactcttgtgcaaca |
202 |
Q |
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| T |
51302646 |
gcttgctgtttatgttttctgagggtaaaataatcaattaataatgacttttttccagggtacgagactaatgtaataattgaataactc-tgtgcaaca |
51302744 |
T |
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| Q |
203 |
ctagcttaaagtcattgc |
220 |
Q |
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|||||||||||||||||| |
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| T |
51302745 |
ctagcttaaagtcattgc |
51302762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 50016499 - 50016717
Alignment:
| Q |
3 |
cttcaatagttctaatttaatttag--tattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtg---aacttgtgtatatttttc |
97 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| |
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| T |
50016499 |
cttcaatagttctaatttaatttagagtattgtaatattttaaattgatctgtgctgcattatgttatatcagtcggtgttgaacttatgtatatttttc |
50016598 |
T |
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| Q |
98 |
caaatgcttgctgtttatgttttctgagggtaaaataatcgattaataatgacttttttccagggtacgagactaatgtaataattgaataactcttgtg |
197 |
Q |
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| T |
50016599 |
caaatgcttgctgtttatgttttctgagagtaaaataatcaattaatgatgactttttt-tagggtacgagactaatgtaatagttgaataactattgtg |
50016697 |
T |
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| Q |
198 |
caacactagcttaaagtcat |
217 |
Q |
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| T |
50016698 |
caacactagctcaaagtcat |
50016717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 44113644 - 44113862
Alignment:
| Q |
3 |
cttcaatagttctaatttaattt--agtattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtg---aacttgtgtatatttttc |
97 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| |
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| T |
44113644 |
cttcaatagttctaatttaattttgagtattgtaatattttaaattgatctgtgctgcattatgttatatcagtcggtgttgaacttatgtatatttttc |
44113743 |
T |
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| Q |
98 |
caaatgcttgctgtttatgttttctgagggtaaaataatcgattaataatgacttttttccagggtacgagactaatgtaataattgaataactcttgtg |
197 |
Q |
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| T |
44113744 |
ctaatgcttgctgtttatgttttctgagtgtaaaataatcaattaatgatgactttttt-tagggtacgagactaatgtaatagttgaataactattgtg |
44113842 |
T |
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| Q |
198 |
caacactagcttaaagtcat |
217 |
Q |
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||||||||||| |||||||| |
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| T |
44113843 |
caacactagctcaaagtcat |
44113862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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