View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6630_low_2 (Length: 454)
Name: NF6630_low_2
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Original strand, 43514413 - 43514846
Alignment:
| Q |
12 |
tcatcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatgaacacattgaagcccttgtgatcccatcaaagaagta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43514413 |
tcatcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatgaacacattgaagcccttgtgatcccatcaaagaagta |
43514512 |
T |
|
| Q |
112 |
tagctttaccaaaagccttgggtgctttgctacaatatgggctatctcttcaagtaatttcttcggatagacagatcctgtcgggttagacggcgaacaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43514513 |
tagctttaccaaaagccttgggtgctttgctacaatatgggctatctcttcaagtaatttctttggatagacagatcctgtcgggttagacggcgaacaa |
43514612 |
T |
|
| Q |
212 |
agaataagcactcttgacctttcagtaattatggattcaagaagtttgggatctaaaaggaaattatcagatatcgacgttggaaggataacgggtgttg |
311 |
Q |
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| T |
43514613 |
agaataagcactcttgacctttcagtaattatggattcaagaagtttgggatctaaaaggaaattatcagatatcgacgttggaaggataacgggtgttg |
43514712 |
T |
|
| Q |
312 |
catcagccatccttgccatttctgggtaactaacatagaatggagctggaataatgacctgaaatattggtatcatagatcaaagatgtcataattagaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43514713 |
catcagccatccttgccatttctgggtaactaacatagaatggagctggaataatgacctgaaatattggtatcatagatcaaagatgtcataattagaa |
43514812 |
T |
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| Q |
412 |
aaagagaaaataaaatatatataataagtataat |
445 |
Q |
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| T |
43514813 |
aaagagaaaataaaatatatataataagtataat |
43514846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 38104040 - 38104412
Alignment:
| Q |
12 |
tcatcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatgaacacattgaagcccttgtgatcccatcaaagaagta |
111 |
Q |
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|
||||||||||||||||||||||||||||| ||||||| ||||| |||||||| | ||| |||| ||||| |||| ||||||||| ||||| ||| ||| |
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| T |
38104040 |
tcatcagagataacctgcacaaaacaactattaagatcttaagaggaactacgatccaagttgaatacattaaagcacttgtgatctcatcagagatgta |
38104139 |
T |
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| Q |
112 |
tagctttaccaaaagccttgggtgctttgctacaatatgggctatctcttcaagtaatttcttcggatagacagatcctgtcgggttagacggcgaacaa |
211 |
Q |
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|| |||||||| |||||| ||||||||||||||||| | |||||||||||||||||| | ||| |||||||||||||||||||||||||| || |||||| |
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| T |
38104140 |
taactttaccagaagcctcgggtgctttgctacaatcttggctatctcttcaagtaaatacttaggatagacagatcctgtcgggttagatggtgaacaa |
38104239 |
T |
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| Q |
212 |
agaataagcactcttgacctttcagtaattatggattcaagaagtttgggatctaaaaggaaattatcagatatcgacgttggaaggataacgggtgttg |
311 |
Q |
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|||||||| | ||||||| ||||||||||| |||| || || ||||||||||||||||||||||||| ||||| ||||||||||| || || ||||||| |
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| T |
38104240 |
agaataagtagtcttgacttttcagtaattttggactcgaggagtttgggatctaaaaggaaattattggatattgacgttggaagaatcacaggtgttg |
38104339 |
T |
|
| Q |
312 |
catcagccatccttgccatttctgggtaactaacatagaatggagctggaataatgacctgaaatattggtat |
384 |
Q |
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|||| |||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||| |||| |
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| T |
38104340 |
catcggccaaccttgccatttctgggtaactaacccaaaatggagctggaattatgacctgaaaaattcgtat |
38104412 |
T |
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