View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6630_low_22 (Length: 207)
Name: NF6630_low_22
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 33557661 - 33557840
Alignment:
| Q |
19 |
atgtcggtttaatacgagttacatacttatttgttgttgtttatattgaatt----aatatcaattaagttattatctcaattgtaaaaattaagaggat |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33557661 |
atgtcggtttaatacgagttacatatttatttgttgttgtttttattgaattaattaatatcaattaagttattatctcaattgtaaaaattaagaggat |
33557760 |
T |
|
| Q |
115 |
cgctaacctctactattaagaaatgacttgtgccatatttgaaattttaaacattttttaagtgttgatccacctatgat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33557761 |
cgctaacctctactattaagaaatgacttgtgccatatttgaaattttaaacattttttaagtgttgatccacctatgat |
33557840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 476774 - 476707
Alignment:
| Q |
66 |
gaattaatatcaattaagttattatctcaattgtaaaaattaagaggatcgctaacctctactattaa |
133 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||||||||| | |||||| ||||||| |||||||| |
|
|
| T |
476774 |
gaattgatatcaattgagtcattatctcaattgtaaaaatgacaaggatcattaacctccactattaa |
476707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University