View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6630_low_4 (Length: 417)

Name: NF6630_low_4
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6630_low_4
NF6630_low_4
[»] chr7 (7 HSPs)
chr7 (268-405)||(3410515-3410652)
chr7 (152-247)||(3410360-3410456)
chr7 (1-39)||(3410206-3410244)
chr7 (150-244)||(22849512-22849604)
chr7 (5-39)||(11295568-11295602)
chr7 (166-218)||(12727815-12727867)
chr7 (152-228)||(28780181-28780257)
[»] chr5 (7 HSPs)
chr5 (166-246)||(31329261-31329341)
chr5 (166-217)||(13642821-13642872)
chr5 (166-218)||(28682769-28682821)
chr5 (152-244)||(35341889-35341980)
chr5 (5-38)||(19068891-19068924)
chr5 (166-246)||(16574368-16574448)
chr5 (150-218)||(29998583-29998651)
[»] chr2 (9 HSPs)
chr2 (152-245)||(22169951-22170044)
chr2 (166-246)||(20477439-20477519)
chr2 (152-213)||(42270372-42270433)
chr2 (194-245)||(29216645-29216696)
chr2 (194-245)||(29329944-29329995)
chr2 (166-245)||(30407051-30407130)
chr2 (152-245)||(12102809-12102902)
chr2 (166-218)||(17678301-17678353)
chr2 (316-372)||(25603811-25603867)
[»] scaffold0437 (1 HSPs)
scaffold0437 (150-245)||(14315-14410)
[»] chr1 (6 HSPs)
chr1 (166-245)||(23487465-23487544)
chr1 (150-244)||(27035838-27035932)
chr1 (166-215)||(16280445-16280494)
chr1 (308-369)||(1686575-1686636)
chr1 (166-218)||(13309391-13309443)
chr1 (166-218)||(24885090-24885142)
[»] chr8 (8 HSPs)
chr8 (150-242)||(23595375-23595467)
chr8 (150-242)||(23604297-23604389)
chr8 (310-372)||(37147834-37147896)
chr8 (166-246)||(14335321-14335401)
chr8 (150-245)||(21593181-21593276)
chr8 (312-375)||(31427469-31427532)
chr8 (150-244)||(16889972-16890066)
chr8 (316-375)||(36985964-36986025)
[»] chr3 (4 HSPs)
chr3 (166-246)||(18517692-18517772)
chr3 (311-369)||(7196071-7196129)
chr3 (5-39)||(5813759-5813793)
chr3 (5-39)||(19826610-19826644)
[»] chr4 (4 HSPs)
chr4 (160-245)||(7841282-7841367)
chr4 (186-246)||(17941051-17941111)
chr4 (166-218)||(19904625-19904677)
chr4 (166-246)||(21424777-21424857)
[»] scaffold0291 (1 HSPs)
scaffold0291 (166-218)||(21886-21938)
[»] chr6 (4 HSPs)
chr6 (166-218)||(10192866-10192918)
chr6 (166-246)||(12435968-12436048)
chr6 (171-217)||(16298804-16298850)
chr6 (152-216)||(26522725-26522789)
[»] scaffold0886 (1 HSPs)
scaffold0886 (150-231)||(2780-2861)
[»] scaffold0020 (1 HSPs)
scaffold0020 (166-218)||(123857-123909)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 268 - 405
Target Start/End: Original strand, 3410515 - 3410652
Alignment:
Q  268 ataaaattcatgctaacattttctataagaacacatttatggtttccacaaatagtaaatatgaattgagaaaaagtaattatcaaaagtttaataaata 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3410515 ataaaattcatgctaacattttctataagaacacatttatggtttccacaaatagtaaatatgaattgagaaaaagtaattatcaaaagtttaataaata 3410614  T
Q  368 aattgacattttcttaataattccttggagaaaacatt 405  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3410615 aattgacattttcttaataattccttggagaaaacatt 3410652  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 3410360 - 3410456
Alignment:
Q  152 gagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctat-atgcatgttctttctccttgcttatat 247  Q
    ||||||||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| || ||| |||| ||||||||||||||||||||||    
T  3410360 gagtttagcaacacaggatggagatatctcgggatgccaatctagttgggatgtcgatgatgtctgtataatgcctgttctttctccttgcttatat 3410456  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3410206 - 3410244
Alignment:
Q  1 ggacagatgtggtttacctaactatagatttccataatc 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  3410206 ggacagatgcggtttacctaactatagatttccataatc 3410244  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 22849604 - 22849512
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgctta 244  Q
    |||||||| ||| || ||||| ||||||||| ||| | |||| ||| ||||||||||||||||| |||  ||||||||| |  ||||||||||||    
T  22849604 ttgagtttggcggcataggatagaggtatctcggggtgccaacctagttgggatgtcgatgatgactccttatgcatgtcc--tctccttgctta 22849512  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 11295602 - 11295568
Alignment:
Q  5 agatgtggtttacctaactatagatttccataatc 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  11295602 agatgtggtttacctaactacagatttccataatc 11295568  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 12727815 - 12727867
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||| ||| ||| ||||| |||| ||| ||||||||||||||||||||||    
T  12727815 aggatgggggtctctcgggatgccaacctagttgggatgtcgatgatgcctct 12727867  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 28780181 - 28780257
Alignment:
Q  152 gagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgt 228  Q
    |||||| ||| || |||||| || | ||||||||| |||| ||| |||||||||||||| |||||||  ||||||||    
T  28780181 gagtttggcggcataggatgaagatttcttgggatgccaacctagttgggatgtcgatgttgcctcttgatgcatgt 28780257  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 31329341 - 31329261
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||||||||  |||| ||| || ||||||||||||||    
T  31329341 aggatggaggtatctcgggataccaatctagttggaatgtcgatgatgcctcttgatgcctgtcctctctccttgcttata 31329261  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 13642872 - 13642821
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctc 217  Q
    ||||||||||||||| ||| |||||||||| |||| ||||||||||||||||    
T  13642872 aggatggaggtatctcggggtaccaatctagttggaatgtcgatgatgcctc 13642821  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 28682821 - 28682769
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||    
T  28682821 aggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctct 28682769  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 35341889 - 35341980
Alignment:
Q  152 gagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgctta 244  Q
    |||||| ||| || ||||||||||||||| ||| | |||| ||| ||||||||||||||||| ||||  |||| ||| || ||||||||||||    
T  35341889 gagtttggcggcataggatggaggtatctcggggtgccaa-ctagttgggatgtcgatgatgactcttgatgcctgtcctctctccttgctta 35341980  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 19068924 - 19068891
Alignment:
Q  5 agatgtggtttacctaactatagatttccataat 38  Q
    |||||||||||||||||||| |||||||||||||    
T  19068924 agatgtggtttacctaactacagatttccataat 19068891  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 16574368 - 16574448
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    ||||||||||||||| ||| | ||||| || ||||||||||||||||| |||   |||| ||| || |||| |||||||||    
T  16574368 aggatggaggtatctcggggtgccaatttagttgggatgtcgatgatgactcctgatgcctgtcctctctcattgcttata 16574448  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 29998651 - 29998583
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    |||||||| ||| || | ||||||||| ||||| ||| |||| ||| ||||||||||||||||| ||||    
T  29998651 ttgagtttggcggcatacgatggaggtctcttgagatgccaacctagttgggatgtcgatgatgtctct 29998583  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 22170044 - 22169951
Alignment:
Q  152 gagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    |||||| ||| || ||||||||||| ||| ||||| |||| ||||||||||||| ||||||||||||  |||| ||| || |||||||||||||    
T  22170044 gagtttggcggcataggatggaggtctctcgggatgccaacctaattgggatgttgatgatgcctcttgatgcctgtcctctctccttgcttat 22169951  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 20477439 - 20477519
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    ||||||||||||||| ||| | |||| ||| ||||||||||||||||||||||  |||  ||| |||||||||||||||||    
T  20477439 aggatggaggtatctcggggtgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctttctccttgcttata 20477519  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 42270433 - 42270372
Alignment:
Q  152 gagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatg 213  Q
    |||||| ||| || ||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  42270433 gagtttggcggcataggatggaggtatctcgggataccaatctagttggaatgtcgatgatg 42270372  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 29216645 - 29216696
Alignment:
Q  194 taattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    |||||||||||||||||||||||||  |||||||| || |||||||||||||    
T  29216645 taattgggatgtcgatgatgcctcttgatgcatgtcctctctccttgcttat 29216696  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 29329944 - 29329995
Alignment:
Q  194 taattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    |||||||||||||||||||||||||  |||||||| || |||||||||||||    
T  29329944 taattgggatgtcgatgatgcctcttgatgcatgtcctctctccttgcttat 29329995  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 30407051 - 30407130
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    ||||||||||||||| ||| ||||| |||| |||| |||||||||||| |||   |||| ||| || |||||||||||||    
T  30407051 aggatggaggtatctcggggtaccactctagttggaatgtcgatgatgtctcatgatgcctgtcctctctccttgcttat 30407130  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 12102809 - 12102902
Alignment:
Q  152 gagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    |||||| ||| || |||||| || | ||| ||||||||||  || |||||||||||||| |||||||  ||| |||| || |||||||||||||    
T  12102809 gagtttggcggcataggatgaagatttctcgggataccaacatagttgggatgtcgatgttgcctcttgatgtatgtcctctctccttgcttat 12102902  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 17678353 - 17678301
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||| ||| | | | |||| ||||||||||||||||||||||||||    
T  17678353 aggatggaggtctctcgaggtgccaacctaattgggatgtcgatgatgcctct 17678301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 25603811 - 25603867
Alignment:
Q  316 caaatagtaaatatgaattgagaaaaagtaattatcaaaagtttaataaataaattg 372  Q
    ||||||||||||||  |||||||| ||||||||||||||| ||| | | ||||||||    
T  25603811 caaatagtaaatatttattgagaagaagtaattatcaaaattttgaaatataaattg 25603867  T

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Target: scaffold0437 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 14410 - 14315
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    |||||||| ||| || ||||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||  |||  ||| || |||||||||||||    
T  14410 ttgagtttggcggcataggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgcttat 14315  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 23487465 - 23487544
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    ||||||||||||||| ||| |||||||||| |||| ||||||||||||||||   |||| ||| || |||||||||||||    
T  23487465 aggatggaggtatctcggggtaccaatctagttggaatgtcgatgatgcctcctgatgcctgtcctctctccttgcttat 23487544  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 27035932 - 27035838
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgctta 244  Q
    |||||||| ||| || ||||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||  |||| ||| || ||||||| ||||    
T  27035932 ttgagtttggcggcataggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctcttgatgcttgtcctctctccttactta 27035838  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 16280445 - 16280494
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcc 215  Q
    ||||||||||| ||| ||| | ||||||||||||||||||||||||||||    
T  16280445 aggatggaggtgtctcggggtgccaatctaattgggatgtcgatgatgcc 16280494  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 1686575 - 1686636
Alignment:
Q  308 ggtttccacaaatagtaaatatgaattgagaaaaagtaattatcaaaagtttaataaataaa 369  Q
    ||||||||||| ||||||||||  ||||  ||| ||||||||| |||||||||| |||||||    
T  1686575 ggtttccacaactagtaaatatttattgcaaaatagtaattataaaaagtttaagaaataaa 1686636  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 13309443 - 13309391
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||| ||| ||| | |||| ||| ||||||||||||||||||||||    
T  13309443 aggatggaggtctctcggggtgccaacctagttgggatgtcgatgatgcctct 13309391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 24885090 - 24885142
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||||||| ||||| |||| ||| | ||||||||||||| ||||||    
T  24885090 aggatggaggtatctcgggatgccaacctagtagggatgtcgatgacgcctct 24885142  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 23595375 - 23595467
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgct 242  Q
    |||||||| ||| || ||||||||||| |||  || |||||| ||| ||||||||||||||||||||||  |||| ||| || ||||||||||    
T  23595375 ttgagtttggcggcataggatggaggtctctcagggtaccaacctagttgggatgtcgatgatgcctcttgatgcgtgtcctctctccttgct 23595467  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 23604297 - 23604389
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgct 242  Q
    |||||||| ||| || ||||||||||| |||  || |||||| ||| ||||||||||||||||||||||  |||| ||| || ||||||||||    
T  23604297 ttgagtttggcggcataggatggaggtctctcagggtaccaacctagttgggatgtcgatgatgcctcttgatgcgtgtcctctctccttgct 23604389  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 37147834 - 37147896
Alignment:
Q  310 tttccacaaatagtaaatatgaattgagaaaaagtaattatcaaaagtttaataaataaattg 372  Q
    |||||||||||||||| |||  ||||| ||||| |||||||||||||||| | ||||||||||    
T  37147834 tttccacaaatagtaagtatttattgaaaaaaattaattatcaaaagtttgagaaataaattg 37147896  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 14335321 - 14335401
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    ||||||||||||||| ||| |||||||||| ||||  |||||||||||||||   |||| ||| || |||| |||||||||    
T  14335321 aggatggaggtatctcggggtaccaatctagttggattgtcgatgatgcctcctgatgcctgtcctctctcgttgcttata 14335401  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 21593181 - 21593276
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    |||||||| ||| || |||||| |||| ||| ||| | |||| ||| |||| |||||||||||||||||  |||| ||| || |||||||||||||    
T  21593181 ttgagtttggcggcataggatgaaggtctctcggggtgccaacctagttggaatgtcgatgatgcctcttgatgcctgtcctctctccttgcttat 21593276  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 31427532 - 31427469
Alignment:
Q  312 tccacaaatagtaaatatgaattgagaaaaagtaattatcaaaagtttaataaataaattgaca 375  Q
    ||||||||||||||||||  | | ||||||||||||| | |||| ||| |||||||||||||||    
T  31427532 tccacaaatagtaaatatttactaagaaaaagtaatttttaaaattttgataaataaattgaca 31427469  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 16889972 - 16890066
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgctta 244  Q
    |||||||| ||| || | ||||||||||||| ||| | |||| ||| ||||||||||||||||| |||   |||| ||| || ||||||||||||    
T  16889972 ttgagtttggcggcataagatggaggtatctcggggtgccaacctagttgggatgtcgatgatgactcctgatgcctgtcctctctccttgctta 16890066  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 36986025 - 36985964
Alignment:
Q  316 caaatagtaaatatgaattgagaaaaa--gtaattatcaaaagtttaataaataaattgaca 375  Q
    |||||||||||||| |||| | |||||  ||||| ||||||||||||| |||||||||||||    
T  36986025 caaatagtaaatattaattaaaaaaaaaagtaataatcaaaagtttaagaaataaattgaca 36985964  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 18517692 - 18517772
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    ||||||||| ||||| ||||| |||| ||| |||||||||||||| |||||||  |||||||| |  ||||||||||||||    
T  18517692 aggatggagctatctcgggatgccaacctagttgggatgtcgatgttgcctcttgatgcatgtccactctccttgcttata 18517772  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 7196071 - 7196129
Alignment:
Q  311 ttccacaaatagtaaatatgaattgagaaaaagtaattatcaaaagtttaataaataaa 369  Q
    ||||||||||||||| |||  ||||||||||||||||| |||||| ||||| |||||||    
T  7196071 ttccacaaatagtaagtatttattgagaaaaagtaattttcaaaattttaagaaataaa 7196129  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 5813793 - 5813759
Alignment:
Q  5 agatgtggtttacctaactatagatttccataatc 39  Q
    ||||||||||||||||||||||||||||| |||||    
T  5813793 agatgtggtttacctaactatagatttccttaatc 5813759  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 19826644 - 19826610
Alignment:
Q  5 agatgtggtttacctaactatagatttccataatc 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  19826644 agatgtggtttacctaactacagatttccataatc 19826610  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 7841282 - 7841367
Alignment:
Q  160 cgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttat 245  Q
    ||||| ||||||||||| ||| ||| |||||| |||||||| ||||||| |||| |||   |||| ||| ||||||||||||||||    
T  7841282 cgacaaaggatggaggtgtctcggggtaccaacctaattggtatgtcgacgatgtctcctgatgcctgtcctttctccttgcttat 7841367  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 17941051 - 17941111
Alignment:
Q  186 taccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    |||||||||| |||| ||||||||||||||||   |||| ||| || ||||||||||||||    
T  17941051 taccaatctagttggaatgtcgatgatgcctcccgatgcctgtcctctctccttgcttata 17941111  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 19904677 - 19904625
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||| ||||||| | |||| ||| ||||||||||||||||| ||||    
T  19904677 aggatggaggtctcttggggtgccaacctagttgggatgtcgatgatgtctct 19904625  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 21424857 - 21424777
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    |||||||||||||||| || ||||||  || ||||||| |||||||||||||   |||| | | || ||||||||||||||    
T  21424857 aggatggaggtatcttagggtaccaacttagttgggatatcgatgatgcctcctgatgcctatcctctctccttgcttata 21424777  T

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Target: scaffold0291 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 21938 - 21886
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||    
T  21938 aggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctct 21886  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 10192866 - 10192918
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||| ||||| | | |||| ||||||||||||||||||||||||||    
T  10192866 aggatggaggtctcttgaggtgccaacctaattgggatgtcgatgatgcctct 10192918  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 12435968 - 12436048
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttctttctccttgcttata 246  Q
    ||||||||||| | | ||| | |||| ||| |||||||||||||||||||||   |||||||| || ||||||||||||||    
T  12435968 aggatggaggtttgtcggggtgccaacctagttgggatgtcgatgatgcctcctgatgcatgtcctctctccttgcttata 12436048  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 16298850 - 16298804
Alignment:
Q  171 ggaggtatcttgggataccaatctaattgggatgtcgatgatgcctc 217  Q
    |||||||||| ||||| |||| ||| |||||||||||||||||||||    
T  16298850 ggaggtatctcgggatgccaacctagttgggatgtcgatgatgcctc 16298804  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 26522725 - 26522789
Alignment:
Q  152 gagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcct 216  Q
    |||||| ||| || ||||||||||| ||| ||| | |||| ||| ||||||||||||||||||||    
T  26522725 gagtttggcggcataggatggaggtctctcggggtgccaacctagttgggatgtcgatgatgcct 26522789  T

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Target: scaffold0886 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 2780 - 2861
Alignment:
Q  150 ttgagtttagcgacacaggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctctatatgcatgttct 231  Q
    |||||||| ||| || ||||||||||| ||| | | |||||| ||| |||||||||||||| |||||||  ||| |||||||    
T  2780 ttgagtttggcggcataggatggaggtttctcgaggtaccaacctagttgggatgtcgatgttgcctcttgatgtatgttct 2861  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 123909 - 123857
Alignment:
Q  166 aggatggaggtatcttgggataccaatctaattgggatgtcgatgatgcctct 218  Q
    ||||||||||||||| ||| | |||| ||| ||||||||||||||||| ||||    
T  123909 aggatggaggtatctcggggtgccaacctagttgggatgtcgatgatgtctct 123857  T

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