View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6630_low_6 (Length: 378)
Name: NF6630_low_6
Description: NF6630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6630_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 35811710 - 35811355
Alignment:
| Q |
11 |
atcatcaccatatctattttctatcaatgacccgctccattctaaatctttagtaaattttaatacgattaattcataaacaccgatagtgtnnnnnnnt |
110 |
Q |
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| T |
35811710 |
atcatcaccatatctattttctatcaatgacccgctccattctaaatctttagtaaattttaatacgattaattcataaacaccgatagtgtaaaaaaat |
35811611 |
T |
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| Q |
111 |
attacactggcaggcaataatcataagccttcaatcactaacaaagtttgttggcaaaaccttaatatattaaagagcaaggttgtctactatggatcca |
210 |
Q |
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| T |
35811610 |
attacactagcaggcaataatcataagccttcaatcactaacaaagtttgttggcaaaaccttaatatattaaagagcaaggttgtctactatggatcca |
35811511 |
T |
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| Q |
211 |
actcaaaaatggatattgccgtatttagtaaattttagtaaaatattgtttttgctcctgaat---ttttagtattaaaaattatgttttattaaacatg |
307 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35811510 |
actcaaaaatggatattgccgtatttagtacattttagtaaaatattgattttgctcctgaattttttttagtattaaaaattatgttttattaaacatg |
35811411 |
T |
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| Q |
308 |
gtaaaagttattcttttgaaaagttcataataaacgcaacaatcaacatacaagtt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35811410 |
gtaaaagttattcttttgaaaagttcataataaacgcaacaatcaacatacaagtt |
35811355 |
T |
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