View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6631_high_3 (Length: 250)
Name: NF6631_high_3
Description: NF6631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6631_high_3 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 95655 - 95527
Alignment:
| Q |
1 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
95655 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttg |
95556 |
T |
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| Q |
101 |
gagtaagcactgaaattcaccggctcaca |
129 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
95555 |
gagtaagcactgaaattcaccggctcaca |
95527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 87639 - 87511
Alignment:
| Q |
1 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
87639 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttg |
87540 |
T |
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| Q |
101 |
gagtaagcactgaaattcaccggctcaca |
129 |
Q |
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||||||| |||||||||||| |||||||| |
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| T |
87539 |
gagtaagaactgaaattcacaggctcaca |
87511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 87474 - 87405
Alignment:
| Q |
130 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
199 |
Q |
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| T |
87474 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
87405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 95490 - 95440
Alignment:
| Q |
130 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95490 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
95440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 40870627 - 40870755
Alignment:
| Q |
1 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40870627 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttg |
40870726 |
T |
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| Q |
101 |
gagtaagcactgaaattcaccggctcaca |
129 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
40870727 |
gagtaagcactgaaattcaccggctcaca |
40870755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 40878644 - 40878772
Alignment:
| Q |
1 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
40878644 |
catagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttg |
40878743 |
T |
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| Q |
101 |
gagtaagcactgaaattcaccggctcaca |
129 |
Q |
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||||||| |||||||||||| |||||||| |
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| T |
40878744 |
gagtaagaactgaaattcacaggctcaca |
40878772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 40878809 - 40878878
Alignment:
| Q |
130 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40878809 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
40878878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 40870792 - 40870842
Alignment:
| Q |
130 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870792 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
40870842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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