View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6631_low_1 (Length: 585)

Name: NF6631_low_1
Description: NF6631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6631_low_1
NF6631_low_1
[»] chr7 (5 HSPs)
chr7 (15-147)||(1262086-1262218)
chr7 (15-146)||(26909972-26910103)
chr7 (15-145)||(43071373-43071503)
chr7 (15-146)||(48849798-48849929)
chr7 (69-138)||(22007347-22007416)
[»] scaffold0035 (1 HSPs)
scaffold0035 (15-146)||(35062-35193)
[»] chr3 (12 HSPs)
chr3 (16-147)||(37982347-37982478)
chr3 (15-146)||(31685076-31685207)
chr3 (15-152)||(24761889-24762026)
chr3 (15-138)||(19882102-19882225)
chr3 (15-145)||(17681767-17681896)
chr3 (15-145)||(53973277-53973407)
chr3 (15-145)||(2549937-2550066)
chr3 (15-145)||(12538627-12538756)
chr3 (15-145)||(24815915-24816045)
chr3 (15-145)||(53027743-53027873)
chr3 (15-145)||(53352752-53352882)
chr3 (117-145)||(32015784-32015812)
[»] chr8 (13 HSPs)
chr8 (293-414)||(10920946-10921068)
chr8 (15-145)||(14678012-14678142)
chr8 (15-145)||(5657771-5657901)
chr8 (15-145)||(27541550-27541679)
chr8 (15-145)||(31100863-31100993)
chr8 (214-301)||(10921533-10921620)
chr8 (501-566)||(10920794-10920859)
chr8 (70-145)||(23738657-23738731)
chr8 (70-147)||(24788079-24788156)
chr8 (15-122)||(5662589-5662695)
chr8 (92-145)||(33689362-33689415)
chr8 (86-146)||(8158460-8158520)
chr8 (86-148)||(24787157-24787221)
[»] chr5 (8 HSPs)
chr5 (15-145)||(22009519-22009649)
chr5 (15-146)||(9043801-9043932)
chr5 (15-145)||(7473480-7473610)
chr5 (15-144)||(30442538-30442667)
chr5 (48-134)||(26840988-26841074)
chr5 (69-145)||(19085422-19085498)
chr5 (15-139)||(22004448-22004571)
chr5 (87-145)||(30463113-30463172)
[»] chr6 (7 HSPs)
chr6 (16-145)||(10092512-10092641)
chr6 (15-138)||(33045422-33045545)
chr6 (33-151)||(3065692-3065809)
chr6 (15-138)||(8976411-8976534)
chr6 (69-147)||(16246700-16246778)
chr6 (69-138)||(30908414-30908483)
chr6 (70-144)||(4660222-4660295)
[»] scaffold0096 (1 HSPs)
scaffold0096 (15-150)||(27405-27539)
[»] chr2 (7 HSPs)
chr2 (15-146)||(23348971-23349102)
chr2 (16-145)||(18355305-18355434)
chr2 (16-145)||(10328884-10329013)
chr2 (15-134)||(12741699-12741818)
chr2 (15-146)||(1615906-1616036)
chr2 (220-336)||(15575614-15575730)
chr2 (15-144)||(24454516-24454644)
[»] scaffold0045 (1 HSPs)
scaffold0045 (15-145)||(11625-11755)
[»] chr4 (4 HSPs)
chr4 (15-145)||(29863352-29863482)
chr4 (214-344)||(13734264-13734394)
chr4 (84-146)||(12506435-12506497)
chr4 (70-128)||(24260237-24260294)
[»] scaffold0596 (1 HSPs)
scaffold0596 (15-145)||(654-784)
[»] chr1 (2 HSPs)
chr1 (69-141)||(50990911-50990983)
chr1 (98-147)||(25223217-25223266)
[»] scaffold0157 (1 HSPs)
scaffold0157 (84-146)||(13980-14042)
[»] scaffold0475 (1 HSPs)
scaffold0475 (70-136)||(7520-7585)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 1262218 - 1262086
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  1262218 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 1262119  T
Q  115 aatgttaacaaagattagatataagtatgattt 147  Q
    |||||||||||||||||||||||||||||||||    
T  1262118 aatgttaacaaagattagatataagtatgattt 1262086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 26909972 - 26910103
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  26909972 caaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccatttaggtttagggtttgcaaagttattagc 26910071  T
Q  115 aatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||||||||||||||||||||||||    
T  26910072 aatgttaacaaagattagatataagtatgatt 26910103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 43071373 - 43071503
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||  | |||| |    
T  43071373 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 43071472  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  43071473 aatgttaacaaagattagatataagtatgat 43071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 48849798 - 48849929
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||| ||| |||||| |||| |    
T  48849798 caaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttttggagccaaaaccatttaggtttaggatttacaaagtcattagc 48849897  T
Q  115 aatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||||||||||||||||||||||||    
T  48849898 aatgttaacaaagattagatataagtatgatt 48849929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 22007416 - 22007347
Alignment:
Q  69 tttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataa 138  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||| |||||||||||    
T  22007416 tttggagccaaaaccatttagatttagggtttgtaaagtcattagcaatgttaacaaaaattagatataa 22007347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 35193 - 35062
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  35193 caaaggatgagatgcatgcttagccaaatgatgagatccaacaacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 35094  T
Q  115 aatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||||||||||||||||||||||||    
T  35093 aatgttaacaaagattagatataagtatgatt 35062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 37982478 - 37982347
Alignment:
Q  16 aaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||  | |||| ||    
T  37982478 aaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagca 37982379  T
Q  116 atgttaacaaagattagatataagtatgattt 147  Q
    ||||||||||||||||||||||||||||||||    
T  37982378 atgttaacaaagattagatataagtatgattt 37982347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 31685207 - 31685076
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    ||||||||||||||||||||||||||||||||||||| |||| | || |||| |||||||||||||||||||||||||||||||||||||||| |||| |    
T  31685207 caaaggatgagatgcatgcttagccaaatgatgagattcaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 31685108  T
Q  115 aatgttaacaaagattagatataagtatgatt 146  Q
    |||||||| |||||||||||||||||||||||    
T  31685107 aatgttaataaagattagatataagtatgatt 31685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 24761889 - 24762026
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  24761889 caaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 24761988  T
Q  115 aatgttaacaaagattagatataagtatgattttaatt 152  Q
    |||||||| || |||||||||||||||||||| |||||    
T  24761989 aatgttaagaaggattagatataagtatgattctaatt 24762026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 19882102 - 19882225
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||  | |||| |    
T  19882102 caaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttacaatttcattagc 19882201  T
Q  115 aatgttaacaaagattagatataa 138  Q
    ||||||||||||||||||||||||    
T  19882202 aatgttaacaaagattagatataa 19882225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 17681896 - 17681767
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||| ||||||||||||||||||| | |  |||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  17681896 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattaac 17681798  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  17681797 aatgttaacaaagattagatataagtatgat 17681767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 53973277 - 53973407
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||| ||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||  | |||| |    
T  53973277 caaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaatttcattagc 53973376  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  53973377 aatgttaacaaagattagatataagtatgat 53973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 2550066 - 2549937
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||| |||| |    
T  2550066 caaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaagtcattagc 2549968  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    ||||||||  |||||||||||||||||||||    
T  2549967 aatgttaattaagattagatataagtatgat 2549937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 12538627 - 12538756
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    ||||||||| |||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| | ||||      
T  12538627 caaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattaga 12538725  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    || ||||||||||||||||||||||||||||    
T  12538726 aaggttaacaaagattagatataagtatgat 12538756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 24816045 - 24815915
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||| ||||||||||||||||||||| | |  | | ||||||||||||||||||||||||||||||||||||||||| |||| |    
T  24816045 caaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 24815946  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||| || |||||||||||||||||||    
T  24815945 aatgttaagaaggattagatataagtatgat 24815915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 53027743 - 53027873
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||  | |  |||||||| ||||||||||||||||||||||||| |||||||||| |    
T  53027743 caaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcatcattttggagtcaaaaccatttaggtttagggtttgtaaagttattagc 53027842  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    | |||||| || |||||||||||||||||||    
T  53027843 agtgttaagaaggattagatataagtatgat 53027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 53352752 - 53352882
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    ||||||||||||||||  || ||||||||||||||||||||| |||  | | ||||||||||||||||| ||||||||||| ||||||||||| |||| |    
T  53352752 caaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccgtttaggtttagagtttgcaaagtcattagc 53352851  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||| || |||||||||||||||||||    
T  53352852 aatgttaagaaggattagatataagtatgat 53352882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 32015784 - 32015812
Alignment:
Q  117 tgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||    
T  32015784 tgttaacaaagattagatataagtatgat 32015812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 293 - 414
Target Start/End: Complemental strand, 10921068 - 10920946
Alignment:
Q  293 atctatcaccacatgtt-gggttcatctttcaaaagaacaaactactcagcacacggagattcattcaaagataaaaaacaaaacaagaaaatggtgatg 391  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10921068 atctgtcaccacatgtttgggttcatctttcaaaagaacaaactactcagcacacggagattcattcaaagataaaaaacaaaacaagaaaatggtgatg 10920969  T
Q  392 ataatgctacaattccccaacac 414  Q
    |||| ||||||||||||||||||    
T  10920968 ataaagctacaattccccaacac 10920946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 14678012 - 14678142
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||||| |||| |    
T  14678012 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggttttcaaagtcattagc 14678111  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  14678112 aatgttaacaaagattagatataagtatgat 14678142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 5657901 - 5657771
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||| |||| |    
T  5657901 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgcaaagtcattagc 5657802  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    || ||||||||||||||||||||||||||||    
T  5657801 aacgttaacaaagattagatataagtatgat 5657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 27541550 - 27541679
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |  | |||||||| ||||||||| |||||||||||||||||||||||||| |||| |    
T  27541550 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgttt-ggagccaaagccatttaggtttagggtttgcaaagtcattagc 27541648  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  27541649 aatgttaacaaagattagatataagtatgat 27541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 31100863 - 31100993
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    ||||||||||||| |||||||| ||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  31100863 caaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccatttaggtttaggatttgcaaagtcattagc 31100962  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  31100963 aatgttaacaaagattagatataagtatgat 31100993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 10921620 - 10921533
Alignment:
Q  214 gaacctagagaactaaaatattcattcaaaattcataaacccatcttcacccaaattctcagcctccatctcttctatcatctatcac 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10921620 gaacctagagaactaaaatattcattcaaaattcataaacccatctccacccaaattctcagcctccatctcttctatcatctatcac 10921533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 501 - 566
Target Start/End: Complemental strand, 10920859 - 10920794
Alignment:
Q  501 caaagtcaatgatttgaatacgacgatcctttgaatgactcgaacaaaagatagttaagaacaatc 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10920859 caaagtcaatgatttgaatacgacgatcctttgaatgactcgaacaaaagatagttaagaacaatc 10920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 23738731 - 23738657
Alignment:
Q  70 ttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  23738731 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 23738657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 24788079 - 24788156
Alignment:
Q  70 ttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgattt 147  Q
    |||| |||||||| | |||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||    
T  24788079 ttggcgccaaaactaattaggtttagggtttgcaaagtcattagcaatgttaattaagattagatataagtatgattt 24788156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 5662695 - 5662589
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||| |||| |||||||||||||||||| ||| | | ||||||  |||| ||| |||  || ||||||||||||||||||||| |||| |    
T  5662695 caaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgcaaagtcattagc 5662597  T
Q  115 aatgttaa 122  Q
    ||| ||||    
T  5662596 aatattaa 5662589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 33689362 - 33689415
Alignment:
Q  92 ttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgat 145  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||| |||||||    
T  33689362 ttagggtctgcaaagtcattagcaatgttaacaaagattagatataggtatgat 33689415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 8158520 - 8158460
Alignment:
Q  86 ttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||| ||||||| || |||| || |||||||||| |||||||||||||||||||    
T  8158520 ttaggtttaggttttgcaaggtaattagcattgttaacaaaaattagatataagtatgatt 8158460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 24787157 - 24787221
Alignment:
Q  86 ttaggtttagggtttgcaaagttattaacaatgttaacaa--agattagatataagtatgatttt 148  Q
    |||| |||||| |||||||||| |||| |||||||||  |  |||||||||||||||||||||||    
T  24787157 ttagttttaggatttgcaaagtcattagcaatgttaattataagattagatataagtatgatttt 24787221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 22009519 - 22009649
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| | |||| |    
T  22009519 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaattcattagc 22009618  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  22009619 aatgttaacaaagattagatataagtatgat 22009649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 9043932 - 9043801
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||  | |||| |    
T  9043932 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 9043833  T
Q  115 aatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||||||||||||||||||||||||    
T  9043832 aatgttaacaaagattagatataagtatgatt 9043801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 7473480 - 7473610
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||  | |||| |    
T  7473480 caaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 7473579  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  7473580 aatgttaacaaagattagatataagtatgat 7473610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 30442538 - 30442667
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||  | |||| |    
T  30442538 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 30442637  T
Q  115 aatgttaacaaagattagatataagtatga 144  Q
    ||||||||||||||||||||||||| ||||    
T  30442638 aatgttaacaaagattagatataagcatga 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 26840988 - 26841074
Alignment:
Q  48 agatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagat 134  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||    
T  26840988 agatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagattagat 26841074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 19085422 - 19085498
Alignment:
Q  69 tttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgat 145  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  19085422 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgat 19085498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 22004448 - 22004571
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||| ||| ||||| ||||||||||||||||||||| | |  ||||| || || ||| |||| || ||||||||||||||||||| | |||| |    
T  22004448 caaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgatt-ggcgcctaaactatctaggtttagggtttgcaaaatcattagc 22004546  T
Q  115 aatgttaacaaagattagatataag 139  Q
    |||||||||||||||||||||||||    
T  22004547 aatgttaacaaagattagatataag 22004571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 30463113 - 30463172
Alignment:
Q  87 taggtttagggttt-gcaaagttattaacaatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||| |||| || |||| || |||||||||||||||||||||||||||||    
T  30463113 taggtttagggttttgcaaggtaattagcattgttaacaaagattagatataagtatgat 30463172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 9e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 10092641 - 10092512
Alignment:
Q  16 aaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaaca 115  Q
    |||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  10092641 aaagaatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaaca 10092542  T
Q  116 atgttaacaaagattagatataagtatgat 145  Q
    ||||||||||||||||||||||||||||||    
T  10092541 atgttaacaaagattagatataagtatgat 10092512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 33045422 - 33045545
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||| ||||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||||| |||| |    
T  33045422 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 33045521  T
Q  115 aatgttaacaaagattagatataa 138  Q
    ||||||||||||||||||||||||    
T  33045522 aatgttaacaaagattagatataa 33045545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 3065809 - 3065692
Alignment:
Q  33 cttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattag 132  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  3065809 cttagccaaatgatgagatccaacggtctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattag 3065711  T
Q  133 atataagtatgattttaat 151  Q
    |||||||||||||| ||||    
T  3065710 atataagtatgattataat 3065692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 8976534 - 8976411
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||| ||||| |||| |||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||| ||||| |||| |    
T  8976534 caaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaaccatttaggtttagagtttgtaaagtcattagc 8976435  T
Q  115 aatgttaacaaagattagatataa 138  Q
    ||| ||||||||||||||||||||    
T  8976434 aatattaacaaagattagatataa 8976411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 16246778 - 16246700
Alignment:
Q  69 tttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgattt 147  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  16246778 tttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtatgattt 16246700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 30908414 - 30908483
Alignment:
Q  69 tttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataa 138  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  30908414 tttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaacaaagattagatataa 30908483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 4660222 - 4660295
Alignment:
Q  70 ttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatga 144  Q
    |||||||||||| | |||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  4660222 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatga 4660295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 27539 - 27405
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| | |||| |    
T  27539 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattagc 27441  T
Q  115 aatgttaacaaagattagatataagtatgattttaa 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  27440 aatgttaacaaagattagatataagtatgattttaa 27405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 23348971 - 23349102
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||  | |||| |    
T  23348971 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 23349070  T
Q  115 aatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||||||||||||||||||||||||    
T  23349071 aatgttaacaaagattagatataagtatgatt 23349102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 18355305 - 18355434
Alignment:
Q  16 aaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||  | |||| ||    
T  18355305 aaaggatgagatgcatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagca 18355404  T
Q  116 atgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||| |||||||||||||    
T  18355405 atgttaacaaagattaaatataagtatgat 18355434  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 10328884 - 10329013
Alignment:
Q  16 aaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||||||||| || ||||||| |||||||||||||||||||||  | |||| ||    
T  10328884 aaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaacaatttaggtttagggtttgcaatttcattagca 10328983  T
Q  116 atgttaacaaagattagatataagtatgat 145  Q
    ||||||||||||||||||||||||||||||    
T  10328984 atgttaacaaagattagatataagtatgat 10329013  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 12741818 - 12741699
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||  | |||| |    
T  12741818 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcctttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 12741719  T
Q  115 aatgttaacaaagattagat 134  Q
    ||||||||||||||||||||    
T  12741718 aatgttaacaaagattagat 12741699  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 1615906 - 1616036
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||| ||||| |||||||||||| ||||  | || |||||| ||||||    
T  1615906 caaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctcccttgttt-ggagcaaaaaccatttagatttaatggttacaaagtcattaac 1616004  T
Q  115 aatgttaacaaagattagatataagtatgatt 146  Q
    |||||||||||||||| |||||||| ||||||    
T  1616005 aatgttaacaaagattggatataaggatgatt 1616036  T

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Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 220 - 336
Target Start/End: Complemental strand, 15575730 - 15575614
Alignment:
Q  220 agagaactaaaatattcattcaaaattcataaacccatcttcacccaaattctcagcctccatctcttctatcatctatcaccacatgttgggttcatct 319  Q
    |||||| ||||| |||||||||||| ||||| ||||||||||||||||||   | ||||||||| ||||||||||| |||||||||| ||||||||||||    
T  15575730 agagaaataaaaaattcattcaaaactcatatacccatcttcacccaaatatgctgcctccatcccttctatcatccatcaccacatattgggttcatct 15575631  T
Q  320 ttcaaaagaacaaacta 336  Q
    | |||||||||||||||    
T  15575630 tccaaaagaacaaacta 15575614  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 24454644 - 24454516
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||| |||   ||||||||||||||||||||| | | ||||||||| || ||| |||  ||||||||||||| ||||||| | | ||| |    
T  24454644 caaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgttt-ggcgcctaaaaaatttaggtttaggatttgcaatggtcttagc 24454546  T
Q  115 aatgttaacaaagattagatataagtatga 144  Q
    ||||||||  ||||||||||||||||||||    
T  24454545 aatgttaattaagattagatataagtatga 24454516  T

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Target: scaffold0045 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 11625 - 11755
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| |||||||| |||||||||||||||||||||| |||| |    
T  11625 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagtcaaaaccagttaggtttagggtttgcaaagtcattagc 11724  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  11725 aatgttaacaaagattagatataagtatgat 11755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 29863352 - 29863482
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||||| || | |    
T  29863352 caaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttacggtttgcaaagtcatgagc 29863451  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    |||||||||||||||||||||||||||||||    
T  29863452 aatgttaacaaagattagatataagtatgat 29863482  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 214 - 344
Target Start/End: Original strand, 13734264 - 13734394
Alignment:
Q  214 gaacctagagaactaaaatattcattcaaaattcataaacccatcttcacccaaattctcagcctccatctcttctatcatctatcaccacatgttgggt 313  Q
    |||||||||||| ||||| |||||||||||| ||||| |||||||||| |||||||   | ||||||||| ||||||||||| |||||||||| ||||||    
T  13734264 gaacctagagaaataaaaaattcattcaaaactcatatacccatcttcccccaaatctgctgcctccatcccttctatcatccatcaccacatattgggt 13734363  T
Q  314 tcatctttcaaaagaacaaactactcagcac 344  Q
    ||||||| ||||||||||||||| |||||||    
T  13734364 tcatcttccaaaagaacaaactattcagcac 13734394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 12506497 - 12506435
Alignment:
Q  84 atttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12506497 atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgatt 12506435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 24260294 - 24260237
Alignment:
Q  70 ttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaaga 128  Q
    |||||||||||| | |||||| |||||||||||||||| |||| |||||||||||||||    
T  24260294 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaaga 24260237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 784 - 654
Alignment:
Q  15 caaaggatgagatgcatgcttagccaaatgatgagatccaactgtcttccttgttttggagccaaaaccatttaggtttagggtttgcaaagttattaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||| ||||||||||||||||||||||||||||  | |||| |    
T  784 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttattttggagtcaaaaccatttaggtttagggtttgcaatttcattagc 685  T
Q  115 aatgttaacaaagattagatataagtatgat 145  Q
    ||||||||||||||| |||||||||||||||    
T  684 aatgttaacaaagatcagatataagtatgat 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 50990983 - 50990911
Alignment:
Q  69 tttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagta 141  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  50990983 tttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagta 50990911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 25223266 - 25223217
Alignment:
Q  98 tttgcaaagttattaacaatgttaacaaagattagatataagtatgattt 147  Q
    ||||||| || |||| || |||||||||||||||||||||||||||||||    
T  25223266 tttgcaaggtaattagcattgttaacaaagattagatataagtatgattt 25223217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 13980 - 14042
Alignment:
Q  84 atttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatataagtatgatt 146  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  13980 atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgatt 14042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 7520 - 7585
Alignment:
Q  70 ttggagccaaaaccatttaggtttagggtttgcaaagttattaacaatgttaacaaagattagatat 136  Q
    |||||||||||| | |||||| |||||||||||||||| |||| |||||||||||||||||| ||||    
T  7520 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattatatat 7585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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