View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6631_low_2 (Length: 466)
Name: NF6631_low_2
Description: NF6631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6631_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 32 - 447
Target Start/End: Original strand, 11293943 - 11294361
Alignment:
| Q |
32 |
tgcttattagaatgtgtgcgttttgtctttagactctttagaaaaatggattaatctatgatggagactcgagaggagtcaa-tggttggctggctatac |
130 |
Q |
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| T |
11293943 |
tgcttattagtatgtgcgcgttttgtctttagactctttaaaaaaatggattaatctatgatggagactcgagaggagtcaaatggttggctggctatac |
11294042 |
T |
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| Q |
131 |
acaaactcacttgtgnnnnnnnngtctccctttgctatgtgctatgataatgaagtcctctttatgcatataactttccttctggaagaggaagagtttg |
230 |
Q |
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| T |
11294043 |
acaaactcacttgtgttttttttgtctccctttgctatgtgctatgataatgaagtcctctttatgcatataactttccttctggaagaggaagagtttg |
11294142 |
T |
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| Q |
231 |
gaacatgtaaccctacctttgggtcaggtccactttgttttgtttttcatataacattgcttga--nnnnnnnngattnnnnnnnncatacaaaggtgga |
328 |
Q |
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| T |
11294143 |
gaacatgtaaccctacctttgggtcaggtccactttgttttgtttttcatataacattgcttgatttttttttttattaaaaaaaacatacaaaggtgga |
11294242 |
T |
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| Q |
329 |
ggtacctttcaatatttcttgaaatcccatgcgggggacccaaaaggttttgtttttnnnnnnnccttggtggaggtgtgatgaacccttttccttacat |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11294243 |
ggtacctttcaatatttcttgaaatcccatgcgggggacccaaaaggttttgtttttaaaaaaaccttggtggaggtgtgatgaacccttttccttacat |
11294342 |
T |
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| Q |
429 |
gcaccaaaagagtgtcata |
447 |
Q |
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| T |
11294343 |
gcaccaaaagagtgtcata |
11294361 |
T |
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