View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6632_high_3 (Length: 340)
Name: NF6632_high_3
Description: NF6632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6632_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 24727141 - 24727477
Alignment:
| Q |
2 |
tttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaacctttcatttccaactcttcatgactat |
101 |
Q |
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| T |
24727141 |
tttgttgtgtttgtgatatgtagctgttcaatttcaagtttgccctttttaaacttaaagtaaaagtccaaacctttcatttccacctcttcatgactat |
24727240 |
T |
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| Q |
102 |
catccgca-caaagtgcttgccattcacaagaaagacactgcagagccaaaacagcatgccgcataaaatgttccagacaaaactgaagcaagaaagacc |
200 |
Q |
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| T |
24727241 |
catccgcatcaaagtgcttgccattcacgagaaagacactgcagagccaaaacagcacgccacataaaatgttccagacaaaactgaagcaagaaagacc |
24727340 |
T |
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| Q |
201 |
aaatccagaagtactagtttgttggttgtcaggtagttttgcttttatggtaactcctgcagttaggagcctcagagcacagcgtttcagtttaagctgc |
300 |
Q |
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| T |
24727341 |
aaatccagaagtactagtttgttggttgtcaggtagttttgcttttatggtaactcctgcagttaggagcctcagagcacagcgtttcagtttaagctgc |
24727440 |
T |
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| Q |
301 |
tgctgccatcgagtctgagtagtattgatgatgtcca |
337 |
Q |
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| T |
24727441 |
tgctgccgtcgagtctgagtagtatcgataatgtcca |
24727477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 24697466 - 24697533
Alignment:
| Q |
239 |
ttgcttttatggtaactcctgcagttaggagcctcagagcacagcgtttcagtttaagctgctgctgc |
306 |
Q |
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| T |
24697466 |
ttgcttttatgataactcctgcagttaggagcctcagagcacaacgattcagtttaagctggtgctgc |
24697533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 24537263 - 24537205
Alignment:
| Q |
238 |
tttgcttttatggtaactcctgcagttaggagcctcagagcacagcgtttcagtttaag |
296 |
Q |
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|||| |||||||| |||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
24537263 |
tttggttttatggcaactcctgcagttaggagtctcagagcacatcgattcagtttaag |
24537205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 24697243 - 24697333
Alignment:
| Q |
2 |
tttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaacctttcatttccaactctt |
92 |
Q |
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| T |
24697243 |
tttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttcaaacatttcaattccacctctt |
24697333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 24826972 - 24827062
Alignment:
| Q |
2 |
tttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaacctttcatttccaactctt |
92 |
Q |
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| T |
24826972 |
tttgtcgtttttgtgatatgcagttgtttaatttcaagagtctccttttcaaacttaaagtaaaagtccaaacctttcaattccatctctt |
24827062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 24854950 - 24855038
Alignment:
| Q |
6 |
ttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaacctttcatttccaactcttca |
94 |
Q |
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|||| ||||||||||| || |||||||||||||||| || |||| ||||||| ||||||| ||||| ||||||| ||| | ||||||| |
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| T |
24854950 |
ttgtttttgtgatatgcagttgttcaatttcaagttccccattttgaaacttaaagtaaaaatccaatcctttcacttctacctcttca |
24855038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 24896186 - 24896278
Alignment:
| Q |
2 |
tttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaacctttcatttccaactcttca |
94 |
Q |
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| T |
24896186 |
tttgttgtttttatgatatgcagttgttcaatttcaagttccccattttgaaacttaaagtaaaaatccaatcctttcacttctacctcttca |
24896278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 24843032 - 24842959
Alignment:
| Q |
5 |
gttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaaccttt |
78 |
Q |
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| T |
24843032 |
gttgttttagtgatatgtaactgtgcaatttccagtttcccctttttgaactcaaagtaaaattccaaaccttt |
24842959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 24537443 - 24537351
Alignment:
| Q |
2 |
tttgttgtgtttgtgatatgtagctgttcaatttcaagttttccctttttaaacttatagtaaaagtccaaacctttcatttccaactcttca |
94 |
Q |
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|||||||| ||||||||||| | ||||||||||||||||| ||||||| |||||| | | |||||||| ||||| || || || ||||||| |
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| T |
24537443 |
tttgttgtttttgtgatatgcaactgttcaatttcaagttcccccttttcaaacttgaatttaaagtccataccttccaatttcacctcttca |
24537351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 24827194 - 24827247
Alignment:
| Q |
229 |
tcaggtagttttgcttttatggtaactcctgcagttaggagcctcagagcacag |
282 |
Q |
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| T |
24827194 |
tcagggagtttcacttttatggtaacccctgcagttaggagtctctgagcacag |
24827247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 24896413 - 24896466
Alignment:
| Q |
243 |
ttttatggtaactcctgcagttaggagcctcagagcacagcgtttcagtttaag |
296 |
Q |
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| T |
24896413 |
ttttatggtaactcctgaagttaggagtctaaaagcacagcacttcagtttaag |
24896466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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