View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6632_low_1 (Length: 814)
Name: NF6632_low_1
Description: NF6632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6632_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 29 - 814
Target Start/End: Complemental strand, 37294165 - 37293386
Alignment:
| Q |
29 |
aagttggagtgtggaaatgtc-atcacacccaatttagagatggccttttgtaaaatatg-atctaaaatttcatattaaagtcacaaaatgttcaaaag |
126 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
37294165 |
aagttggagtgtgtaaatgtccatcacacccaatttagagatggccttttgtaaaatatgtatctaaaacttcatattaaagtcacaaaatgttcaaaag |
37294066 |
T |
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| Q |
127 |
gtagaaagaagttctggaatgatcatttgaagttatttactattattaaaaggattgtatatgnnnnnnnngaaagggtcggcttaacaagctagccgta |
226 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | | | || |
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| T |
37294065 |
gtagaaagaagttctggaatgatcgtttgaagttatttactattattaaaaggattgtatatgtttttct-gaaagggtcagcttaacaaaccaatccta |
37293967 |
T |
|
| Q |
227 |
ttgtttcacaaagatcatgtcaccggtatgtcttgatagccatacaacactcatcagtcatcaaaatgatgagcgtggcataattagcaaactgaccctt |
326 |
Q |
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| T |
37293966 |
ttgtttcacaaagatcatgtcagcggtatgtcttgatagccatacaacattcatca-------aaatgatgagcgtggcataattagcaaactgaccctt |
37293874 |
T |
|
| Q |
327 |
ttttaattgtatatgttgaaatagactcaactgtaatagctaatattacttcatgtagatgttaacaaaagaggataaagtgtgattcaaacctttcttg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37293873 |
ttttaattgtatatgttgaaatagactcaactgtaataactaatattacttcatgtagatgttaacaaaagaggacaaagtgtgattcaaacctttctta |
37293774 |
T |
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| Q |
427 |
aaaaagtggagtctgattttcctaaaacttatataatactattaaaaataactttaacacaagcnnnnnnnaactaattgtattcaataaatactgtact |
526 |
Q |
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| T |
37293773 |
aaaaagtggagtctaattttcctaaaacttaaataatactactaaaaataactttaacacaagctttttttaactaattgtattcaataaatactgtact |
37293674 |
T |
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| Q |
527 |
tatgcaaaagctgcttcttggtaatattgttaacaattttaagtgtggcgccatagagtacattgaatatgctgcaactgaacccttgccatatatgtat |
626 |
Q |
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| T |
37293673 |
tatgcaaaagctgcttcttggtaatattgttaacaattttaagtgtggcgccatagagtacattgaatatgctgcaactgaacccttgccatatatgtat |
37293574 |
T |
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| Q |
627 |
tgatcaaagaatataagtttataagatggtaattttgctatataaaacaagcaattgtggaagaaatagtaattttattatgaatatcaaattctgaatg |
726 |
Q |
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| T |
37293573 |
tgatcaaagaatataagcttataagatggtaattttgctatataaaacaagcaattgtggaagaaatagtaattttattatgaatatcaaattctgaatg |
37293474 |
T |
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| Q |
727 |
aacaatctcccttattcttgaataactctcttccttaaaaccagaggaaaccaagcatagctcacagcacagagttgagcacttgaac |
814 |
Q |
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| T |
37293473 |
aaaaatctcccttattcttgaataactctcttccttaaaaccagaggaaaccaagcatagctcacagcacagagttgagcacttgaac |
37293386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 32837466 - 32837397
Alignment:
| Q |
253 |
tatgtcttgatagccatacaacactcatcagtcatcaaaatgatgagcgtggcataattagcaaactgacccttttt |
329 |
Q |
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| T |
32837466 |
tatgtcttgatagccatacagcactcatca----tca---tgatgagcgtggcatatttagccaactgacccttttt |
32837397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 5620035 - 5619959
Alignment:
| Q |
200 |
aagggtcggcttaacaagctagccgtattgtttcacaaagatcatgtcaccggtatgtcttgatagccatacaacac |
276 |
Q |
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| T |
5620035 |
aagggtcggcttaacgagccaaccttagagtttcacaaaaatcatgtcagtcatatgtcttgatagccatacaacac |
5619959 |
T |
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