View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6632_low_4 (Length: 333)
Name: NF6632_low_4
Description: NF6632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6632_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 4737879 - 4737650
Alignment:
| Q |
19 |
gaaaacccgtccaattggggtgcatttggacggatactcgcatatatgagttttggtgcaatgcctagatccattcctagaaaccaaatggttaacacnn |
118 |
Q |
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| T |
4737879 |
gaaaacccatcgaattgggatgcatttaggcgggtaccctcatatatgaattttggtgcaatgcctagatccattcctagaaaccaaatggttaacacaa |
4737780 |
T |
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| Q |
119 |
nnnnnn-------------ggccacggcaaacaatttttaggtggttaagtatcaagccacatctcaattcaacataacttttggcgtattagagcatat |
205 |
Q |
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| T |
4737779 |
aaaaaaaaaaaaaaaaaaggaccacgacaaacaatagttaggagtttaagtatcaagccacatctaaattcaacataacttttggcgtattagagcatat |
4737680 |
T |
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| Q |
206 |
gataaaaatacgataatacaaatagctata |
235 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4737679 |
gataaaaatacgataatacaaatagctata |
4737650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 4737547 - 4737470
Alignment:
| Q |
239 |
aagaaaggcatgtgagtcacgtttttgtttcttttcgtctttcttgttttcatggagaacaaaatgatccccaggtct |
316 |
Q |
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| T |
4737547 |
aagaaaggcatgtgagtcacgttttggtttcttttcgtctttcttgttttcatggagaacaaaatgatcctcaggtct |
4737470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 31391608 - 31391542
Alignment:
| Q |
150 |
gttaagtatcaagccacatctcaattcaacataac-ttttggcgtattagagcatatgataaaaata |
215 |
Q |
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| T |
31391608 |
gttaagtatcaagccacgtctcaattcaacataactttttggcgtgttagagcatataataaaaata |
31391542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 31391456 - 31391388
Alignment:
| Q |
239 |
aagaaaggcatgtgagtcacgtttttgtttcttttcgtctttcttgttttcatggagaacaaaatgatc |
307 |
Q |
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| T |
31391456 |
aagaaaggcacgtgagacacatttctatatcttttcgtctttcttgtttttctagagagcaaaatgatc |
31391388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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