View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6633_high_1 (Length: 344)
Name: NF6633_high_1
Description: NF6633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6633_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 54 - 327
Target Start/End: Original strand, 20067391 - 20067663
Alignment:
| Q |
54 |
catctcattttatattcgaatttatgaaaaattgctagttttgatcattgtaattattttaaactgggacaaggctcaatcctcgaagctaaagtccact |
153 |
Q |
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| T |
20067391 |
catctcattttatattcgaatttatgaaaaattgctagttttgatcattgtaattattttaaacttgaacaaggctcaatcctcgaagttaaagtccact |
20067490 |
T |
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| Q |
154 |
cataaaactaagactcaataaggcgctcaaatgcactcgcggatcacttgtactagcaaagatccacaaattagtaaataaaatgctcaaaacccatctg |
253 |
Q |
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| T |
20067491 |
cacaaagctaagactcaataaggcgctcaaatgcactcgcggatcacttgtactagcaaagatccgcaaattagtaaataaaatgctcagagccca-cta |
20067589 |
T |
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| Q |
254 |
agccctccaaacaatcaagttgtcacttgaattttgtagatgcttcatctcgtgttaatgatgaacaatttaat |
327 |
Q |
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| T |
20067590 |
aaccctccaaacaatcaagctgtcacttgaattttgtagatgcttcatctcgtgttagtgatgaacaatttaat |
20067663 |
T |
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