View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6633_high_3 (Length: 265)
Name: NF6633_high_3
Description: NF6633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6633_high_3 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 30048940 - 30048676
Alignment:
| Q |
1 |
catcttaaattactattaattttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30048940 |
catcttaaattactattaattttccattctttctttcaataacaatctttcccatgccttttccaactagtgttctatgatatgcaagcttcaccttgct |
30048841 |
T |
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| Q |
101 |
gtttcttctagtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttca |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30048840 |
gtttcttcccgtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttacgactttca |
30048741 |
T |
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| Q |
201 |
ttattggttgttttcaccattaacaagactgtatcataatctaaatcttcttgtgaaagtatggc |
265 |
Q |
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| T |
30048740 |
ttattggttgttttcaccattaacaagactgcatcataatctaaatcttcttgtgaaagtttggc |
30048676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 15065483 - 15065610
Alignment:
| Q |
126 |
aaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaaca |
225 |
Q |
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||||||| ||||||| ||||||||||||||||||||||| || |||| |||||||| ||||| |||| || |||||| | |||||| | ||||| || | |
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| T |
15065483 |
aaccaatccttattttcagtcatatgattagaacaaccagtaactaagaaccatctttctgaattgcagctctcattactagttgttgtaaccatcaata |
15065582 |
T |
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| Q |
226 |
agactgtatcataatctaaatcttcttg |
253 |
Q |
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| T |
15065583 |
acattgtgtcagaatctgaatcctcttg |
15065610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 40370319 - 40370482
Alignment:
| Q |
24 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
123 |
Q |
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|||||||||| ||||||| |||| || ||||| |||| | |||||| |||||||| |||||| |||||||| |||||||||||| | | |||| |
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| T |
40370319 |
ccattctttccttcaatagcaatgttccccattccttctgcaactaagactctatgatctgcaagtttcacctttgtgtttcttctagaatccacttctc |
40370418 |
T |
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| Q |
124 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctga |
187 |
Q |
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| ||| | ||| | || ||||||||||||||||||||||| ||||||| ||||| || ||||| |
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| T |
40370419 |
ttaacaatgtctgagttccagtcatatgattagaacaaccagtatctaagaaccaactttctga |
40370482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 15065378 - 15065438
Alignment:
| Q |
21 |
tttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgat |
81 |
Q |
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|||||| |||||| |||||||||||||| | ||| |||| | |||||||||||||||||| |
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| T |
15065378 |
tttccactctttccgtcaataacaatcttcctcattccttctgcaactagtgttctatgat |
15065438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 17784785 - 17784909
Alignment:
| Q |
129 |
caattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaaga |
228 |
Q |
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|||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||| |||||| | ||| || | ||||| || || | |
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| T |
17784785 |
caatccttatttccagtcatatgattagaacaaccagtatctaaaaaccatctttctgaattgcaactctcattactagtttttgtaaccatcaataaca |
17784884 |
T |
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| Q |
229 |
ctgtatcataatctaaatcttcttg |
253 |
Q |
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|||| | | ||||| |||||||||| |
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| T |
17784885 |
ctgtgtaagaatcttaatcttcttg |
17784909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 41946783 - 41946733
Alignment:
| Q |
142 |
cagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgc |
192 |
Q |
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||||||||||||||||||||||| ||||||| ||||| || ||||| |||| |
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| T |
41946783 |
cagtcatatgattagaacaaccaatatctaagaaccaactttctgaattgc |
41946733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 28647878 - 28647833
Alignment:
| Q |
142 |
cagtcatatgattagaacaaccattatctaaaaaccatctatctga |
187 |
Q |
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||||||||||||||||||||||| ||||||| ||||| || ||||| |
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| T |
28647878 |
cagtcatatgattagaacaaccagtatctaagaaccaactttctga |
28647833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 22930350 - 22930601
Alignment:
| Q |
1 |
catcttaaattactattaattttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgct |
100 |
Q |
| |
|
|||||| |||||| | |||| ||| |||||||| ||||||| ||||||||||| |||| | |||||| |||| |||||| |||||||||||||| | |
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| T |
22930350 |
catcttcaattacaactaatcttcaattctttccttcaatagatatctttcccatgccttctgcaactaatgttgtatgatcaacaagcttcaccttggt |
22930449 |
T |
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| Q |
101 |
gtttcttctagtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttca |
200 |
Q |
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|| | | || | ||||||||| ||| |||||||||| |||||| || ||| | ||| || ||||||| |||||||| | ||| |||| || ||| |
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| T |
22930450 |
attcttccaaggatcgatttcttttaacaaattcttattaaaagtcatgtggttaaatcaaacagtatctaagaaccatctttttgaattgcagctctca |
22930549 |
T |
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| Q |
201 |
ttattggttgttttcaccattaacaagactgtatcataatctaaatcttctt |
252 |
Q |
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|| || ||||| ||||||| ||||||||||| ||| ||||||| ||||||| |
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| T |
22930550 |
gtactgattgttgtcaccatcaacaagactgtgtcagaatctaagtcttctt |
22930601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 23255018 - 23254900
Alignment:
| Q |
135 |
ttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtat |
234 |
Q |
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|||||| || |||||||||||||||||| | ||||||| |||||||| ||||| |||| ||| |||||| | |||||| | ||||| || || | ||| | |
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| T |
23255018 |
ttatttccaatcatatgattagaacaactagtatctaacaaccatctttctgaattgcaactctcattactagttgttgtaaccatgaataacattgtgt |
23254919 |
T |
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| Q |
235 |
cataatctaaatcttcttg |
253 |
Q |
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| T |
23254918 |
cagaatctgaatcttcttg |
23254900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 23255132 - 23255072
Alignment:
| Q |
21 |
tttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgat |
81 |
Q |
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||||||||||||| ||||||| |||| || ||||| |||| | |||||||||||||||||| |
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| T |
23255132 |
tttccattctttccttcaatagcaatattccccattccttctgcaactagtgttctatgat |
23255072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 27570804 - 27570958
Alignment:
| Q |
24 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
123 |
Q |
| |
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|||||||||| ||||||| |||| || ||||| |||| | |||||| ||||| || |||||| |||||||| ||||||||| || | | |||| |
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| T |
27570804 |
ccattctttccttcaatagcaatattccccattccttctgcaactaagactctattatctgcaagtttcacctttgtgtttcttccagaatccacttctc |
27570903 |
T |
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| Q |
124 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaacca |
178 |
Q |
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| T |
27570904 |
ttaaccatgtcttggttccagtcatatgattagaacaaccagtatctaagaacca |
27570958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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