View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6633_low_1 (Length: 597)

Name: NF6633_low_1
Description: NF6633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6633_low_1
NF6633_low_1
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-246)||(8985-9230)
[»] chr7 (1 HSPs)
chr7 (2-246)||(16420273-16420518)
[»] chr8 (1 HSPs)
chr8 (1-246)||(5538247-5538497)
[»] chr3 (1 HSPs)
chr3 (19-178)||(19932296-19932453)
[»] chr1 (4 HSPs)
chr1 (19-178)||(18901508-18901672)
chr1 (107-178)||(51784714-51784783)
chr1 (19-58)||(51784794-51784833)
chr1 (2-32)||(18901457-18901487)
[»] chr5 (2 HSPs)
chr5 (34-178)||(37940370-37940512)
chr5 (2-32)||(37940550-37940580)
[»] chr6 (1 HSPs)
chr6 (212-246)||(3508684-3508718)
[»] chr4 (1 HSPs)
chr4 (197-242)||(28657267-28657313)


Alignment Details
Target: scaffold0003 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 8985 - 9230
Alignment:
Q  2 tagatattactagctagtatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggc 101  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  8985 tagatattactagctagtatttattagagtaatata--ataagattagcaagaaagta--ggaaaacaaaaggaagcatagagcaaaggaagtgattggc 9080  T
Q  102 ttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtggaagaattattagtaaccg-ttc 200  Q
     |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  9081 gtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaattattagtaaccggttc 9180  T
Q  201 ctattctttttcacat----ccctttctatactttgaagaacaaaaacaa 246  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||    
T  9181 ctattctttttcacacacacccctttctatactttgaagaacaaaaacaa 9230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 16420273 - 16420518
Alignment:
Q  2 tagatattactagctagtatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggc 101  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  16420273 tagatattactagctagtatttattagagtaatata--ataagattagcaagaaagta--ggaaaacaaaaggaagcatagagcaaaggaagtgattggc 16420368  T
Q  102 ttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtggaagaattattagtaaccg-ttc 200  Q
     |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  16420369 gtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaattattagtaaccggttc 16420468  T
Q  201 ctattctttttcacat----ccctttctatactttgaagaacaaaaacaa 246  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||    
T  16420469 ctattctttttcacacacacccctttctatactttgaagaacaaaaacaa 16420518  T

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Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 5538497 - 5538247
Alignment:
Q  1 ttagatattactagctagtatttattagagtaatatata--ataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaa-ggaagtgat 97  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||    
T  5538497 ttagatattactagctagtatttattagagtaatatatataataagattagcaagaaagta--ggaaaacaaaaggaagcatagagcaaaaggaagtgat 5538400  T
Q  98 tggcttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtggaagaattattagtaacc- 196  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||     
T  5538399 tg-cgtgtggaaataaacatccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtgggagaattattagtaacca 5538301  T
Q  197 gttcctattctttttcacat----ccctttctatactttgaagaacaaaaacaa 246  Q
    |||||||||| ||||||||     ||||||||||||||||||||||||||||||    
T  5538300 gttcctattccttttcacacacacccctttctatactttgaagaacaaaaacaa 5538247  T

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Target: chr3 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 19932296 - 19932453
Alignment:
Q  19 tatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaataaacatc 118  Q
    ||||||||| |||||||||||||||||||||||| ||||||  ||||| ||||||||||||||||| ||||||| |||||| || |||||||||||||||    
T  19932296 tatttattaaagtaatatataataagattagcaataaagta--ggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacatc 19932393  T
Q  119 cacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg 178  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  19932394 cacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 19932453  T

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Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 18901508 - 18901672
Alignment:
Q  19 tatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaa-------t 111  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||| |||||| || |||||||       |    
T  18901508 tatttattaaagtaatatataataagattagcaagaaagta--ggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacatt 18901605  T
Q  112 aaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  18901606 aaacatccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 18901672  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 51784783 - 51784714
Alignment:
Q  107 gaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg 178  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  51784783 gaaataaacat--acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 51784714  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
Q  19 tatttattagagtaatatataataagattagcaagaaagt 58  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  51784833 tatttattaaagtaatatataataagattagcaagaaagt 51784794  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 18901457 - 18901487
Alignment:
Q  2 tagatattactagctagtatttattagagta 32  Q
    |||||||||||||||||||||||||||||||    
T  18901457 tagatattactagctagtatttattagagta 18901487  T

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Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 37940512 - 37940370
Alignment:
Q  34 tatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaataaacatccacgtttcttcccaa 133  Q
    ||||||||||||||||||||||||||  || || ||||| |||||||||   ||||||| |||||  || ||||||||||||||||||||||||||||||    
T  37940512 tatataataagattagcaagaaagta--ggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatccacgtttcttcccaa 37940415  T
Q  134 tcccattttccactatgttccatattgtgaggaaataagttagtg 178  Q
    || ||||||||||||||||||||||| | ||||||||||||||||    
T  37940414 tctcattttccactatgttccatatttttaggaaataagttagtg 37940370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 37940580 - 37940550
Alignment:
Q  2 tagatattactagctagtatttattagagta 32  Q
    |||||||||||||||||||||||||||||||    
T  37940580 tagatattactagctagtatttattagagta 37940550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 3508684 - 3508718
Alignment:
Q  212 cacatccctttctatactttgaagaacaaaaacaa 246  Q
    |||| ||||||||||||||||||||||||||||||    
T  3508684 cacacccctttctatactttgaagaacaaaaacaa 3508718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 28657313 - 28657267
Alignment:
Q  197 gttcctattctttttcacat-ccctttctatactttgaagaacaaaa 242  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||||    
T  28657313 gttcctattctttttcacacacccattctatactttgaagaacaaaa 28657267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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