View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6633_low_6 (Length: 245)

Name: NF6633_low_6
Description: NF6633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6633_low_6
NF6633_low_6
[»] chr5 (11 HSPs)
chr5 (1-231)||(30048367-30048597)
chr5 (141-231)||(16597894-16597984)
chr5 (127-231)||(12019841-12019945)
chr5 (127-231)||(37659779-37659883)
chr5 (127-231)||(7102875-7102979)
chr5 (127-231)||(16795221-16795325)
chr5 (127-231)||(30696348-30696452)
chr5 (127-231)||(40370748-40370852)
chr5 (145-220)||(10275599-10275674)
chr5 (13-103)||(16596564-16596654)
chr5 (148-230)||(15065838-15065920)
[»] scaffold0044 (1 HSPs)
scaffold0044 (127-231)||(48366-48470)
[»] chr3 (5 HSPs)
chr3 (145-231)||(21848180-21848266)
chr3 (113-231)||(43548767-43548885)
chr3 (127-231)||(54170845-54170949)
chr3 (140-231)||(9698633-9698724)
chr3 (113-231)||(22930793-22930912)
[»] chr7 (2 HSPs)
chr7 (127-231)||(27757949-27758053)
chr7 (127-231)||(7943584-7943688)
[»] chr6 (6 HSPs)
chr6 (127-231)||(8319005-8319109)
chr6 (127-231)||(17880980-17881084)
chr6 (127-231)||(27571233-27571337)
chr6 (151-224)||(23254611-23254684)
chr6 (131-231)||(17160645-17160745)
chr6 (127-224)||(21414100-21414197)
[»] chr4 (4 HSPs)
chr4 (127-231)||(43682681-43682785)
chr4 (140-231)||(27187191-27187282)
chr4 (127-231)||(44148110-44148214)
chr4 (122-224)||(31355738-31355840)
[»] chr2 (5 HSPs)
chr2 (139-223)||(42515385-42515469)
chr2 (127-231)||(8051944-8052048)
chr2 (147-231)||(13270049-13270133)
chr2 (127-231)||(36671603-36671707)
chr2 (145-222)||(17256341-17256418)
[»] chr8 (7 HSPs)
chr8 (127-231)||(201185-201289)
chr8 (127-231)||(316022-316126)
chr8 (127-231)||(30409304-30409408)
chr8 (127-231)||(43810984-43811088)
chr8 (145-231)||(1287879-1287965)
chr8 (127-231)||(28647463-28647567)
chr8 (127-231)||(41946368-41946472)
[»] chr1 (2 HSPs)
chr1 (127-231)||(26312565-26312669)
chr1 (127-231)||(39794947-39795051)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30048597 - 30048367
Alignment:
Q  1 ataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggctttgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30048597 ataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccagaacctcctccttttgaagattcagttttatcactggctttgttc 30048498  T
Q  101 ttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048497 ttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaa 30048398  T
Q  201 agcttgttgaattgatctttcactacttctt 231  Q
    |||||||||||||||||||||||||||||||    
T  30048397 agcttgttgaattgatctttcactacttctt 30048367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 16597894 - 16597984
Alignment:
Q  141 tttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctt 231  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  16597894 tttgcctttcttgaaattcttcttatcataaccatctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctt 16597984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 12019945 - 12019841
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  12019945 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 12019846  T
Q  227 ttctt 231  Q
    |||||    
T  12019845 ttctt 12019841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 37659883 - 37659779
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  37659883 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 37659784  T
Q  227 ttctt 231  Q
    |||||    
T  37659783 ttctt 37659779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 7102875 - 7102979
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7102875 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7102974  T
Q  227 ttctt 231  Q
    |||||    
T  7102975 ttctt 7102979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 16795325 - 16795221
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  16795325 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 16795226  T
Q  227 ttctt 231  Q
    |||||    
T  16795225 ttctt 16795221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 30696452 - 30696348
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  |||||| |||||||||||||| | |    
T  30696452 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgc 30696353  T
Q  227 ttctt 231  Q
    |||||    
T  30696352 ttctt 30696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 40370748 - 40370852
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||| ||||| | |    
T  40370748 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgc 40370847  T
Q  227 ttctt 231  Q
    |||||    
T  40370848 ttctt 40370852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 10275674 - 10275599
Alignment:
Q  145 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatcttt 220  Q
    ||||||||||| || ||| ||||||  ||||||||||| | ||||||||||||||  |||||||||||||||||||    
T  10275674 cctttcttgaagttatttctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt 10275599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 16596564 - 16596654
Alignment:
Q  13 cttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggctttgttcttc 103  Q
    ||||||||||||||| ||  |||| |||||||| ||||| ||| | |||||||||||||||||||||| ||| || || ||||| ||||||    
T  16596564 cttcttcttatcaaaacccctctttttgccttggtaatttccaaagcctcctccttttgaagattcagctttgtcgctagctttcttcttc 16596654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 15065838 - 15065920
Alignment:
Q  148 ttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct 230  Q
    |||||||| |||||||||||| | ||||| |||||||  || |||||||| || |||||||||||| || ||||||| |||||    
T  15065838 ttcttgaagttctttttatcagaatcatctttcttcatggtctgaacttgcaaggcttgttgaattcatatttcactgcttct 15065920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 48366 - 48470
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  48366 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 48465  T
Q  227 ttctt 231  Q
    |||||    
T  48466 ttctt 48470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 21848266 - 21848180
Alignment:
Q  145 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctt 231  Q
    ||||||||||| ||||| |||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||    
T  21848266 cctttcttgaagttcttcttatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctt 21848180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 43548885 - 43548767
Alignment:
Q  113 tttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaat 212  Q
    |||||||||||||  ||||||| ||  | || ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||| ||  |||||||||||    
T  43548885 tttgaccagtttcctccttagaatttttcttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaat 43548786  T
Q  213 tgatctttcactacttctt 231  Q
    |||||||||||| ||||||    
T  43548785 tgatctttcactgcttctt 43548767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 54170845 - 54170949
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  54170845 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 54170944  T
Q  227 ttctt 231  Q
    |||||    
T  54170945 ttctt 54170949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 9698724 - 9698633
Alignment:
Q  140 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctt 231  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||    
T  9698724 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctt 9698633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 22930793 - 22930912
Alignment:
Q  113 tttgaccagtttcg-cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaa 211  Q
    |||||||||||||  ||||| |||||| | |||||||||||||| ||||| ||| || | |||||  | || | |||||||||||| ||   ||||||||    
T  22930793 tttgaccagtttcctcccttggagttattcttgcctttcttgaagttcttcttaacaaaatcatctctattaatagtttgaacttgcaattgttgttgaa 22930892  T
Q  212 ttgatctttcactacttctt 231  Q
    ||||||||||||||||||||    
T  22930893 ttgatctttcactacttctt 22930912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 27758053 - 27757949
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27758053 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27757954  T
Q  227 ttctt 231  Q
    |||||    
T  27757953 ttctt 27757949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 7943584 - 7943688
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7943584 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7943683  T
Q  227 ttctt 231  Q
    |||||    
T  7943684 ttctt 7943688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 8319005 - 8319109
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  8319005 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8319104  T
Q  227 ttctt 231  Q
    |||||    
T  8319105 ttctt 8319109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 17880980 - 17881084
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  17880980 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 17881079  T
Q  227 ttctt 231  Q
    |||||    
T  17881080 ttctt 17881084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 27571233 - 27571337
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27571233 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27571332  T
Q  227 ttctt 231  Q
    |||||    
T  27571333 ttctt 27571337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 23254684 - 23254611
Alignment:
Q  151 ttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact 224  Q
    ||||| |||||| ||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||||||    
T  23254684 ttgaagttctttctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcact 23254611  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 17160745 - 17160645
Alignment:
Q  131 tagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct 230  Q
    |||||||| | || |||||||||||  | ||  ||||||| ||||||||||| | |||||||||||  || ||||||||||||||||||||||| |||||    
T  17160745 tagagttattcttccctttcttgaatattttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttct 17160646  T
Q  231 t 231  Q
    |    
T  17160645 t 17160645  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 21414100 - 21414197
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact 224  Q
    |||||||||||  | || ||||||||||| |||||  ||||||  |||||||||||   ||||||||||||||  ||||||||| ||||| |||||||    
T  21414100 cccttagagtttttcttccctttcttgaagttcttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcact 21414197  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 43682681 - 43682785
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || |||||||| || |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| |    
T  43682681 cccttagagtttttcttccctttctttaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgc 43682780  T
Q  227 ttctt 231  Q
    |||||    
T  43682781 ttctt 43682785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 27187282 - 27187191
Alignment:
Q  140 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctt 231  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||    
T  27187282 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctt 27187191  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 44148214 - 44148110
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  44148214 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 44148115  T
Q  227 ttctt 231  Q
    |||||    
T  44148114 ttctt 44148110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 31355840 - 31355738
Alignment:
Q  122 tttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttc 221  Q
    |||| |||||||||||  | || | ||||||||| |||||  ||||||  |||| |||||| | ||||||||||||||  ||||||||||||||||||||    
T  31355840 tttcccccttagagtttttcttccttttcttgaagttcttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttc 31355741  T
Q  222 act 224  Q
    |||    
T  31355740 act 31355738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 42515469 - 42515385
Alignment:
Q  139 cttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac 223  Q
    ||||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  42515469 ctttttcctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac 42515385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 8052048 - 8051944
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  8052048 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8051949  T
Q  227 ttctt 231  Q
    |||||    
T  8051948 ttctt 8051944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 13270049 - 13270133
Alignment:
Q  147 tttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctt 231  Q
    ||||||||| || ||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  13270049 tttcttgaagttattcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctt 13270133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 36671707 - 36671603
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  36671707 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 36671608  T
Q  227 ttctt 231  Q
    |||||    
T  36671607 ttctt 36671603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 17256418 - 17256341
Alignment:
Q  145 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttca 222  Q
    ||||||||||| |||||  ||||||| ||||||||  | | |||||||||||| ||| ||||||||||||||||||||    
T  17256418 cctttcttgaagttcttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttca 17256341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 201185 - 201289
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  201185 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 201284  T
Q  227 ttctt 231  Q
    |||||    
T  201285 ttctt 201289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 316022 - 316126
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  316022 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 316121  T
Q  227 ttctt 231  Q
    |||||    
T  316122 ttctt 316126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 30409304 - 30409408
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  30409304 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 30409403  T
Q  227 ttctt 231  Q
    |||||    
T  30409404 ttctt 30409408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 43810984 - 43811088
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  43810984 cccttagagtttttcttccctttcttgaagttcttcatatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 43811083  T
Q  227 ttctt 231  Q
    |||||    
T  43811084 ttctt 43811088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 1287965 - 1287879
Alignment:
Q  145 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctt 231  Q
    ||||||||||| |||||  ||||||  ||||||||||| | |||||||| |||||  ||||||| ||||||||||||||| ||||||    
T  1287965 cctttcttgaagttcttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctt 1287879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 28647567 - 28647463
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||| || || | |||||||||||| |  ||||||||||||||||||||| | |    
T  28647567 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgc 28647468  T
Q  227 ttctt 231  Q
    |||||    
T  28647467 ttctt 28647463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 41946472 - 41946368
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || |||||||| || ||||   ||||| | ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  41946472 cccttagagtttttcttccctttcttaaagttctccctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgc 41946373  T
Q  227 ttctt 231  Q
    |||||    
T  41946372 ttctt 41946368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 26312669 - 26312565
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  26312669 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 26312570  T
Q  227 ttctt 231  Q
    |||||    
T  26312569 ttctt 26312565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 39795051 - 39794947
Alignment:
Q  127 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 226  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  39795051 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 39794952  T
Q  227 ttctt 231  Q
    |||||    
T  39794951 ttctt 39794947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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