View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_high_11 (Length: 405)
Name: NF6635_high_11
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 4329521 - 4329148
Alignment:
| Q |
18 |
gtaaggttgtatcaacttagtccttcataataacaatacttaaaattgatctatgaaattgaaaattttaattatagtaaagacttattttagttcctta |
117 |
Q |
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| T |
4329521 |
gtaaggttgtatca-cttagtccttcataataacaatacttaaaattgatctatgaaattgaaaattttaattatagtaaagacttattttagttcctta |
4329423 |
T |
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| Q |
118 |
cgattttctcgtggaccaattcggttcttgacnnnnnnntaatatcaaattaatccctcgatttaactgatagatataccacttggcttgcaagaaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329422 |
cgattttctcgtggaccaattcggttcttgacaaaaaaataatatcaaattaatccctcgatttaactgatagatataccacttggcttgcaagaaaatt |
4329323 |
T |
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| Q |
218 |
ttgagggaaaaaataaatctctgatcttttaattaagtatgtcactccttttaaatttgnnnnnnnaatagcaaatatatataatgaaaaagataccaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| | |
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| T |
4329322 |
ttgagggaaaaaataaatctctgatcttttaattaagtatgtcactccttttaaatttgttttttcaatagcaaatatatataatgaaaaggataccaaa |
4329223 |
T |
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| Q |
318 |
attggaaaaaagaaggaggacaaggaggaatagatattaaattaggcccttagaccaaacaaccacctataacct |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329222 |
attggaaaaaagaaggaggacaaggaggaatagatattaaattaggcccttagaccaaacaaccacctataacct |
4329148 |
T |
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