View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_high_12 (Length: 398)
Name: NF6635_high_12
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 384
Target Start/End: Complemental strand, 3730696 - 3730334
Alignment:
| Q |
22 |
gtgcacataattgagagtttcataaattagagccattcaactaccatgttttcggccaagaacaaatttggttgattaaacacaaattcgttagctattt |
121 |
Q |
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| T |
3730696 |
gtgcacataattgagagtttcataaattagagccattcaactaccatgttttcggccaagaacaaatttggttgattaaacacaaattcgttagctattt |
3730597 |
T |
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| Q |
122 |
gtgaacaaacctttcatgattagtagcttttccggtagaaataaccgacaaggatgtaaaattattcatgcagacaacggaagagatggatggtgcgtgc |
221 |
Q |
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| T |
3730596 |
gtgaacaaacctttcatgattagtagcttttccggtagaaataaccgacaagtatgtaaaattattcatgcagacaacggaagagatggatggtgcgtgc |
3730497 |
T |
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| Q |
222 |
gaacacaacaatgtgatttcagaaggatcattgatgtccaaaacggtaacaaaccattatcattgttgtatttgtacctatgtccttattatgtagggat |
321 |
Q |
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| T |
3730496 |
gaacacaacaatgtggtttcagaaggatcattgatgtccaaaacggtaacaaaccattatcattgttgtatttgtacctatgtccttattatgtagggat |
3730397 |
T |
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| Q |
322 |
cgttgcttaaacatagttaaatgcaggttgaaatgcaaaacaaagatgatctaagtatgagtt |
384 |
Q |
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| T |
3730396 |
cgttgcttaaacatagttaaatgcaggttgaaatgcaaaacaaagatgatctaagtatgagtt |
3730334 |
T |
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