View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_high_13 (Length: 378)
Name: NF6635_high_13
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 26612156 - 26611806
Alignment:
| Q |
11 |
cagagagtatgattctaagaggttgttgaaggagcattttaagagaatatctggacaggacttgcctattaagtctgcacaagtaagtactattttatag |
110 |
Q |
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| T |
26612156 |
cagagagtatgattctaagaggttgttgaaggagcattttaagagaatatctggacaggacttgcctattaagtctgcacaagtaagtactcttttatag |
26612057 |
T |
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| Q |
111 |
ttcttgttttttatggtttagctctgaatttcattctttagcttaagttttgatgggtttgattactcattcacattgatgtttgtaccttataagataa |
210 |
Q |
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| T |
26612056 |
ttcttgttttttatggtttagctctgaatttcattctttagcttaagttttgttgggtttgattactcattcacattgatgtttgtaccttataagataa |
26611957 |
T |
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| Q |
211 |
aatacatgatgtgattatttttgttaccatcctatgatgtgcaatgtatacaagttatcaattaccaatttgagcatgtggactagagttcgatccttga |
310 |
Q |
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| T |
26611956 |
aatacatgatgtgattatttttgttaccatcttatgatgtgcaatgtatacaagttatcaattaccaatttgagcatggggactagagtttgatccttga |
26611857 |
T |
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| Q |
311 |
ctagtgagtgtcgaaaaacatcgagagtcccttaattggatctctgtacct |
361 |
Q |
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| T |
26611856 |
ctagtgagtgtcgaaaaacatcgagagtcccttaattggatctctgtacct |
26611806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 14661358 - 14661268
Alignment:
| Q |
11 |
cagagagtatgattctaagaggttgttgaaggagcattttaagagaatatctggacaggacttgcctattaagtctgcacaagtaagtact |
101 |
Q |
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| T |
14661358 |
cagagagtatgattctaagagactgttgaaggagcactttaagagactttctggcaaggacttacctatcaagtctgcacaagtaagtact |
14661268 |
T |
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