View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_high_14 (Length: 370)
Name: NF6635_high_14
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 9234871 - 9234973
Alignment:
| Q |
7 |
tagattatactatagaccgttggattaattcaacaattgaaattttactataagaggtagatgggctgaagaggatctcatcttctatgacaatcctttc |
106 |
Q |
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| T |
9234871 |
tagataatactatagaccattggattaattgaacaattgaaattttgctataagaggtagatgggctaaagaggatctcgtcctctatg-caatcctttc |
9234969 |
T |
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| Q |
107 |
aaag |
110 |
Q |
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|||| |
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| T |
9234970 |
aaag |
9234973 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 9235187 - 9235253
Alignment:
| Q |
290 |
ccattctttcttgtctttagtttttccaaaatataaacaaagacaagcccttttgtttcttacatat |
356 |
Q |
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| T |
9235187 |
ccattctttcttgtctttagttcttccaaactataaacaaagacaagcccttttgtttcttacatat |
9235253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 9235112 - 9235158
Alignment:
| Q |
242 |
atccaatttgcatatatacaaatgtcttcaatcaatatgcaaggtga |
288 |
Q |
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| T |
9235112 |
atccattttgcatatacacaaatgtcttcaatcaatatgcaaggtga |
9235158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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