View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_high_16 (Length: 345)
Name: NF6635_high_16
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_16 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 188 - 345
Target Start/End: Original strand, 25524023 - 25524180
Alignment:
| Q |
188 |
ttgagaggtcataaatagcaaaagcattaaatcaattttaaaaatgagacacattataaggcatcatgattatatatggggcaagtcccataattctcaa |
287 |
Q |
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| T |
25524023 |
ttgagaggtcatgaatagcaaaagcattaaatcaattttaaaaatgagacacattataaggcatcatgattatatatggggcaagtcccataattctcac |
25524122 |
T |
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| Q |
288 |
gaaaaagcctcttatttctaaaactctgcacaacgtgagaagaatcaggtttcaaatt |
345 |
Q |
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| T |
25524123 |
gaaaaagcctcttaattctaaaactctgcacaacgtgagaagaatcaggtttcaaatt |
25524180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 25538665 - 25538801
Alignment:
| Q |
145 |
ttggacagaaacaaagttcccaacaaagtacacataca------tgaaattgagaggtcataaatagcaaaagcattaaa---------tcaatttt-aa |
228 |
Q |
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| T |
25538665 |
ttggacagaatcaaagttcccaacaaagtacatatacatgaaattgaaattgagaggtcatgaatacaaaaagcattaaatcaggcatctcaattttaaa |
25538764 |
T |
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| Q |
229 |
aaatgagacacattataaggcatcatgattatatatg |
265 |
Q |
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| T |
25538765 |
aaatgagacacattataaggcatcatgactatatatg |
25538801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 25523985 - 25524017
Alignment:
| Q |
10 |
catcatcatgagatagaaaacactgttccagtg |
42 |
Q |
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| T |
25523985 |
catcatcatgagatagaaaacactgttccagtg |
25524017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 44461222 - 44461277
Alignment:
| Q |
279 |
aattctcaagaaaaagcctcttatttctaaaactctgcacaacgtgagaagaatca |
334 |
Q |
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| T |
44461222 |
aattctcgagaaaaaccctcttatttctaagactctgcacaatctgagaagaatca |
44461277 |
T |
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