View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6635_high_2 (Length: 741)

Name: NF6635_high_2
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6635_high_2
NF6635_high_2
[»] chr4 (13 HSPs)
chr4 (19-439)||(27446388-27446818)
chr4 (440-734)||(27451195-27451489)
chr4 (440-721)||(23907324-23907605)
chr4 (440-720)||(48623549-48623829)
chr4 (440-694)||(1778038-1778293)
chr4 (440-665)||(435267-435492)
chr4 (440-654)||(53703655-53703870)
chr4 (439-692)||(39707472-39707725)
chr4 (613-705)||(16001137-16001230)
chr4 (107-171)||(27439076-27439140)
chr4 (628-720)||(56224743-56224835)
chr4 (22-108)||(27559054-27559139)
chr4 (445-510)||(2296364-2296429)
[»] chr7 (13 HSPs)
chr7 (440-720)||(32629592-32629868)
chr7 (444-720)||(36650974-36651250)
chr7 (440-719)||(33350828-33351107)
chr7 (440-685)||(39907401-39907646)
chr7 (440-695)||(38896622-38896877)
chr7 (440-704)||(24178217-24178481)
chr7 (499-720)||(11592669-11592890)
chr7 (440-626)||(22346586-22346772)
chr7 (440-583)||(38606156-38606298)
chr7 (440-550)||(46356873-46356983)
chr7 (440-513)||(36870346-36870419)
chr7 (436-495)||(11593158-11593217)
chr7 (642-711)||(33738551-33738620)
[»] chr6 (8 HSPs)
chr6 (440-720)||(20428659-20428939)
chr6 (444-720)||(5260274-5260550)
chr6 (462-707)||(30669888-30670132)
chr6 (440-720)||(6082369-6082660)
chr6 (440-720)||(9705778-9706035)
chr6 (440-589)||(3629377-3629526)
chr6 (488-719)||(26290765-26290995)
chr6 (461-651)||(2681479-2681669)
[»] chr8 (7 HSPs)
chr8 (440-720)||(15216293-15216571)
chr8 (440-720)||(36544132-36544411)
chr8 (440-674)||(42855035-42855271)
chr8 (440-541)||(36566263-36566364)
chr8 (477-546)||(6184814-6184883)
chr8 (607-687)||(13588720-13588800)
chr8 (607-721)||(31977595-31977709)
[»] chr2 (9 HSPs)
chr2 (443-693)||(45368651-45368901)
chr2 (440-720)||(24584628-24584911)
chr2 (447-720)||(8179773-8180046)
chr2 (440-687)||(452638-452885)
chr2 (539-721)||(13148301-13148482)
chr2 (490-720)||(37281087-37281316)
chr2 (440-525)||(2609703-2609788)
chr2 (440-513)||(14769487-14769560)
chr2 (439-482)||(13148540-13148583)
[»] chr1 (10 HSPs)
chr1 (440-714)||(43241403-43241677)
chr1 (440-721)||(8670897-8671178)
chr1 (440-720)||(51441786-51442066)
chr1 (461-720)||(49348445-49348703)
chr1 (440-684)||(29173551-29173795)
chr1 (440-710)||(32405486-32405752)
chr1 (440-669)||(45833593-45833820)
chr1 (607-688)||(11681833-11681914)
chr1 (461-665)||(35829434-35829638)
chr1 (440-654)||(34828107-34828321)
[»] chr5 (9 HSPs)
chr5 (440-720)||(2076496-2076776)
chr5 (440-720)||(20317971-20318251)
chr5 (440-720)||(24177504-24177784)
chr5 (486-720)||(1288596-1288830)
chr5 (443-720)||(26939-27215)
chr5 (615-685)||(22832091-22832161)
chr5 (440-679)||(37123591-37123831)
chr5 (614-687)||(25937109-25937183)
chr5 (544-678)||(756080-756214)
[»] chr3 (7 HSPs)
chr3 (440-720)||(51448731-51449011)
chr3 (440-704)||(52137824-52138088)
chr3 (458-720)||(38849082-38849344)
chr3 (445-721)||(3368742-3369016)
chr3 (523-695)||(27916583-27916753)
chr3 (443-510)||(48220971-48221038)
chr3 (440-513)||(50630343-50630414)
[»] scaffold0113 (1 HSPs)
scaffold0113 (440-720)||(13280-13559)
[»] scaffold0018 (1 HSPs)
scaffold0018 (440-648)||(30520-30728)
[»] scaffold0045 (1 HSPs)
scaffold0045 (458-625)||(90130-90297)
[»] scaffold0171 (1 HSPs)
scaffold0171 (462-579)||(5568-5685)
[»] scaffold0220 (1 HSPs)
scaffold0220 (486-549)||(25277-25340)
[»] scaffold0140 (1 HSPs)
scaffold0140 (563-633)||(14931-15001)
[»] scaffold0073 (1 HSPs)
scaffold0073 (607-721)||(20494-20608)


Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 27446388 - 27446818
Alignment:
Q  19 acactttcatttttcattcgtttctaagctgaaatgccatccaaccgagacagttatgaacagagatatttgagtttttggtcgaa----------tttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||    
T  27446388 acactttcatttttcattcgtttctaagctgaaatgccatccaaccgagacagttatgaacagagatatttgagtttttggtcgaatttcaacgaatttc 27446487  T
Q  109 tgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattctgttgtccaataaacgtgtaatttaacaatggcatagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27446488 tgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattctgttgtccaataaacatgtaatttaacaatggcatagg 27446587  T
Q  209 tcaaaagaaaacataattctcaccgaaggattactattagctagttcttttattggaagaagtaggagaacaattgcggttgtaaaattgcaaaatgaaa 308  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446588 tcaaaagaaaacataattctcaccgaaggattactatttgctagttcttttattggaagaagtaggagaacaattgcggttgtaaaattgcaaaatgaaa 27446687  T
Q  309 tcgaagagccttgtaatcataagttcgtcagcctcgggcatgtcaaaacaaccatatgttctagagatgtccatcaagaatcacaaggttttagagtaga 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27446688 tcgaagagccttgtaatcataagttcgtcagcctcgggcatgtcaaaacaaccatatgttctagaggtgtccatcaagaatcacaaggttttagagtaga 27446787  T
Q  409 tgactgacttggagaaatgaaagagatttgt 439  Q
    |||||||||||||||||||||||||||||||    
T  27446788 tgactgacttggagaaatgaaagagatttgt 27446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 440 - 734
Target Start/End: Original strand, 27451195 - 27451489
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  27451195 cacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 27451294  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
     ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  27451295 aaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaacatgagtctcttttcttagtcttcgctcaattaccct 27451394  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataaggtgcttcttctc 734  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27451395 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgtatatcccctttgttcttataaggtgcttcttctc 27451489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 440 - 721
Target Start/End: Original strand, 23907324 - 23907605
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  23907324 cacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtc 23907423  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||||||  |||||||||||||  || || |||||    
T  23907424 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 23907523  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 721  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| ||||||||||||    
T  23907524 ttcccataactttatggtatgactcattagcttaattcccctataattcgcggaattttgtatatcccccttgttcttataa 23907605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 48623549 - 48623829
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || | |||||||||| |||||||||    
T  48623549 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtc 48623648  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||| ||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  48623649 gaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtcttctttcgatcaccct 48623748  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  48623749 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgttcttata 48623829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 440 - 694
Target Start/End: Original strand, 1778038 - 1778293
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttcc-ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 538  Q
    |||||||||||||| | ||||||||||||| ||||   |||||| | |||||||||| ||||||| ||||||||| || |||||||||||| |||| |||    
T  1778038 cacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgt 1778137  T
Q  539 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 638  Q
    |||||||||||| |  ||||||||||| ||||||||||||||||| |||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||    
T  1778138 cgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccc 1778237  T
Q  639 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 694  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  1778238 tttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa 1778293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 440 - 665
Target Start/End: Complemental strand, 435492 - 435267
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||  |||||||||    
T  435492 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtc 435393  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||||||  ||||||  ||||  ||| ||  |||||||||||||  || || |||||    
T  435392 gaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtcttctttcgatcaccct 435293  T
Q  640 ttcccataacttcatggtatgactca 665  Q
    ||||||||||||||||||||||||||    
T  435292 ttcccataacttcatggtatgactca 435267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 440 - 654
Target Start/End: Complemental strand, 53703870 - 53703655
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgt 538  Q
    |||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| |||||||| ||||| ||| || |||||||||||| ||||||||    
T  53703870 cacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtcctttttcatccgtccgatatcgctccgtcacgcgt 53703771  T
Q  539 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 638  Q
    |||||||||||| |  ||||||||||||||||| ||| ||||||| ||| |  ||||||| ||||  ||||||  |||||||||||||  || || ||||    
T  53703770 cgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacccgagtctcctttcttagtcttctttcgatcaccc 53703671  T
Q  639 tttcccataacttcat 654  Q
    ||||||||||||||||    
T  53703670 tttcccataacttcat 53703655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 439 - 692
Target Start/End: Complemental strand, 39707725 - 39707472
Alignment:
Q  439 tcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 538  Q
    |||||||| ||||||||| ||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| ||  | ||||||||| |||| |||    
T  39707725 tcacaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgt 39707626  T
Q  539 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc- 637  Q
    |||||||||||  || ||| | ||||| | || ||||||||||||| ||||  |||||   |||   || | | ||||||||||||||| ||||| |||     
T  39707625 cgaagtaagtaaatcgctttcgtagtcaatct-ccaggcataaaacaaaattggttattcgtaaatcgactttcttttcttagtcttcgttcaatcacct 39707527  T
Q  638 ctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgc 692  Q
     ||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39707526 ttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc 39707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 613 - 705
Target Start/End: Original strand, 16001137 - 16001230
Alignment:
Q  613 ttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcatt-agcttaattcccctataattcgcgcaatgatgtatatc 705  Q
    ||||||||||||||| | ||| |||||||||||||||||||| |||||||||||| |  ||||||| |||||||||| |||||| |||||||||    
T  16001137 ttttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgtatatc 16001230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 27439076 - 27439140
Alignment:
Q  107 tctgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattct 171  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||| | |||||||||| |||||    
T  27439076 tctgtatacatcttatttttgcacaaaagattatatatagaaacagaaccctttttacaaattct 27439140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 720
Target Start/End: Complemental strand, 56224835 - 56224743
Alignment:
Q  628 ctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||||||||  | ||||  ||||||||| | || ||||||||    
T  56224835 ctcaattaccatttcccacaacttcatgacatgactcattagtttaattcctctataatttacacaattttgtatatcctccttattcttata 56224743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 27559139 - 27559054
Alignment:
Q  22 ctttcatttttcattcgtttctaagctgaaatgccatccaaccgagacagttatgaacagagatatttgagtttttggtcgaatttc 108  Q
    |||| ||||||||||| ||| ||||| ||| || |||||||| |||| ||||||||||| | |||||||| ||  ||||||||||||    
T  27559139 ctttaatttttcattctttt-taagcagaactgtcatccaacggagatagttatgaacatatatatttgacttcatggtcgaatttc 27559054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 2296429 - 2296364
Alignment:
Q  445 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 510  Q
    ||||||| |||| |||||||  ||| ||||| |||||| | |||||||||| ||||||||||||||    
T  2296429 aatctctttaggaactctattgtacaccttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 5e-92; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 440 - 720
Target Start/End: Complemental strand, 32629868 - 32629592
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||||| |||| |||||||||    
T  32629868 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtc 32629769  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||    | || |||||||||||||||| ||||||||||| ||||||  ||||||  |||| ||||||| ||||||||||||||| |||||||||||    
T  32629768 gaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtcttcgttcaattaccct 32629673  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  32629672 ttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatgttgtatatcccccttgttcttata 32629592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 444 - 720
Target Start/End: Complemental strand, 36651250 - 36650974
Alignment:
Q  444 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 543  Q
    |||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||    
T  36651250 aaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaag 36651151  T
Q  544 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 643  Q
    ||||||| |  |||||||| |||||||||||| |||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||||||    
T  36651150 taagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccctttcc 36651051  T
Q  644 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||| |||||||||||    
T  36651050 cataacttcatggtatgactcattagcttaattctcctataattcacgcaattttgtatatcccccttgttcttata 36650974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 440 - 719
Target Start/End: Original strand, 33350828 - 33351107
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| |  ||||||||| ||||||||||||||||| || |||||||||||| ||||||||     
T  33350828 cacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtt 33350927  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  |  || |||||    
T  33350928 gaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtcttcttttgatcaccct 33351027  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttat 719  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  33351028 ttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgttcttat 33351107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 440 - 685
Target Start/End: Original strand, 39907401 - 39907646
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  39907401 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 39907500  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||||  ||||||  ||||  | ||||  |||||||||||||  || || |||||    
T  39907501 gaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtcttctttcgatcaccct 39907600  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataa 685  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39907601 ttcccataacttcatggtatgactcattagcttaattccccaataa 39907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 440 - 695
Target Start/End: Complemental strand, 38896877 - 38896622
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |   |||||    
T  38896877 cacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattgtgcgtc 38896778  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||| |||||||||||||||||||| |||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  38896777 gaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 38896678  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 695  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38896677 tttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaat 38896622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 440 - 704
Target Start/End: Original strand, 24178217 - 24178481
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    ||||||||||||||||||||||| |||||| || || |||||| | ||||||||||||| ||  ||||| |||| || || ||||||||| |||||| ||    
T  24178217 cacaaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatcacgcatc 24178316  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    | || |||||| || ||||||||||||||||||  ||| |||||||||||  ||||||  |||| ||||||| ||||||||||||||| | ||| |||||    
T  24178317 gcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttcttagtcttcgttgaatcaccct 24178416  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatat 704  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||    
T  24178417 ttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaattctgtatat 24178481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 499 - 720
Target Start/End: Complemental strand, 11592890 - 11592669
Alignment:
Q  499 caagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatct 598  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||||| || |  |||||||||||||||||| || |||||||||||||  ||||||     
T  11592890 caagtcttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatcc 11592791  T
Q  599 ttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgat 698  Q
     ||||  ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  11592790 gtaactcgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatttt 11592691  T
Q  699 gtatatcccctttgttcttata 720  Q
    |||||||||| ||||| |||||    
T  11592690 gtatatcccccttgtttttata 11592669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 440 - 626
Target Start/End: Complemental strand, 22346772 - 22346586
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||    
T  22346772 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgtgtc 22346673  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttc 626  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||   |||  ||||||  |||||||||||||    
T  22346672 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtcttc 22346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 440 - 583
Target Start/End: Complemental strand, 38606298 - 38606156
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| | |||||||||| || |||||||||||||| || |||||||||||| |||||||||    
T  38606298 cacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 38606200  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaa 583  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||    
T  38606199 gaagtaagtagatcgctttcatagtcgacctcccagacataaaa 38606156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 440 - 550
Target Start/End: Original strand, 46356873 - 46356983
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||  || |||||||||||| |||||||||    
T  46356873 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatcacgcgtc 46356972  T
Q  540 gaagtaagtag 550  Q
    |||||||||||    
T  46356973 gaagtaagtag 46356983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 36870346 - 36870419
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 513  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| |||||||||    
T  36870346 cacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 495
Target Start/End: Complemental strand, 11593217 - 11593158
Alignment:
Q  436 ttgtcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaa 495  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||    
T  11593217 ttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaa 11593158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 711
Target Start/End: Original strand, 33738551 - 33738620
Alignment:
Q  642 cccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatccccttt 711  Q
    ||||||||||||| ||||||||||| || |||||| || |||| || |||||||  |||| |||||||||    
T  33738551 cccataacttcatagtatgactcataagtttaatttccttatattttgcgcaattttgtaaatccccttt 33738620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 3e-90; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 20428659 - 20428939
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    ||||||||||||||||||||||||||||||||||||  ||||| | |||||||||  || |||||||||||||| || |||||||||||| |||| ||||    
T  20428659 cacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatcacacgtc 20428758  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
     |||||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||| | |||| ||||||| | ||||||||||||| |||||||||||    
T  20428759 aaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacgtgagtctctgttcttagtcttcgttcaattaccct 20428858  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  20428859 ttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatgttgtatatcccccttgttcttata 20428939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 444 - 720
Target Start/End: Original strand, 5260274 - 5260550
Alignment:
Q  444 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 543  Q
    |||||||||||||||||||||||||||||||| ||||||   |||||||||| || |||||||||||||| || |||||||||||| ||| ||||||||     
T  5260274 aaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaa 5260373  T
Q  544 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 643  Q
    |||  || || |||||||| |||||||||||  |||||||||||||  ||||||  |||| ||||||| |||||| ||||||||||||||||||||||||    
T  5260374 taaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtcttcgctcaattaccctttcc 5260473  T
Q  644 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  5260474 cataacttcatggtatgactcattagcttaattcccctataattcgcgcattgttgtatatcccccttgttcttata 5260550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 462 - 707
Target Start/End: Complemental strand, 30670132 - 30669888
Alignment:
Q  462 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 561  Q
    ||||| |||||||| |||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| |  |||||||    
T  30670132 tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccat 30670033  T
Q  562 agtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatga 661  Q
    |||||||||||  |||||||||||||||  ||||||  |||| |||||||  |||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  30670032 agtcgacctcct-ggcataaaaccaaattggttatccgtaacttgagtctcatttcttagtcttcgttcaatcatcctttgccataacttcatggtatga 30669934  T
Q  662 ctcattagcttaattcccctataattcgcgcaatgatgtatatccc 707  Q
    |||||||||||||||||||||||||| ||||| |  ||||||||||    
T  30669933 ctcattagcttaattcccctataatttgcgcatttttgtatatccc 30669888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 440 - 720
Target Start/End: Complemental strand, 6082660 - 6082369
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| |||||||| |||||||| || |||||||||| | ||||  |||    
T  6082660 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatcacatgtc 6082561  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataa-----------gttatctttaacatgagtctattttcttagtcttcgc 628  Q
    ||||||||||| |  |||||||||||||||||||||||||||||  ||| ||           ||||||  ||||  ||||||  |||||||||||||      
T  6082560 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaaaaaaaaaaaaaaaaattggttatccgtaactcgagtctcctttcttagtcttctt 6082461  T
Q  629 tcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||    
T  6082460 tcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatgccccttgttcttata 6082369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 440 - 720
Target Start/End: Complemental strand, 9706035 - 9705778
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || |||||||||||| || ||||||    
T  9706035 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcgcgcgtc 9705936  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||  ||| |  ||||||  |||| ||||||| ||||||||||               ||    
T  9705935 gaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacgtgagtctcttttcttagt---------------ct 9705851  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9705850 ttcccataacttcatggtatga--------cttaattcccctataattcgcgcaatgttgtatatcccccttgttcttata 9705778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 440 - 589
Target Start/End: Complemental strand, 3629526 - 3629377
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||  |||||||| ||||||||||||||  ||||| | |||||||||| || ||||||||||| | ||| |||||||||||| |||  || |    
T  3629526 cacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcatacgcc 3629427  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 589  Q
    ||||||||||| ||| |||||| |||||||||| | |||||||| |||||    
T  3629426 gaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat 3629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 488 - 719
Target Start/End: Complemental strand, 26290995 - 26290765
Alignment:
Q  488 aaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa 587  Q
    |||||||| |||||||| ||||| | |||  ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| |||  |||||||| ||    
T  26290995 aaaactaagtgcaagtcctttttttttgtctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaa 26290897  T
Q  588 ataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 687  Q
    ||   || ||  |||| |||| || |||| |||||||||| ||||| || ||||    |||||| |||||||||||||| || ||||||||||||| |||    
T  26290896 attgattgtcaataacttgagactctttttttagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcatt 26290797  T
Q  688 cgcgcaatgatgtatatcccctttgttcttat 719  Q
    ||| ||||  ||||||||||| ||||||||||    
T  26290796 cgcacaattttgtatatcccccttgttcttat 26290765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 651
Target Start/End: Original strand, 2681479 - 2681669
Alignment:
Q  461 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 560  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| ||||||| | ||  ||||||| |    ||  ||||||| ||||||  || ||||||    
T  2681479 ctatcatacgccttctccaaatcaatgaaaactaagtgcaagtattttttacccgtctgatatcgttgtaccatacgtcgaactaagtaagtcgcttcca 2681578  T
Q  561 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataactt 651  Q
    ||||| || |  ||| |||||||||||||  ||||||  |  |  |||||| |||||||| |||||  ||||| |||||||||| ||||||    
T  2681579 tagtcaactttacagacataaaaccaaattggttatccattcctcgagtctcttttcttaatcttccttcaatcaccctttcccgtaactt 2681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 4e-86; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 15216293 - 15216571
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||| ||||||||||||||||||||||||   ||||| | |||||||||| || ||||||||||||||  |||||||||||  | ||| |||||    
T  15216293 cacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcgc--catcaagcgtc 15216390  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||  |||| ||||||| |||||||||||||||||||||||||||    
T  15216391 gaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataacttgagtctcttttcttagtcttcgctcaattaccct 15216490  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||    
T  15216491 ttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatgttgtatatccaccttgttcttata 15216571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 440 - 720
Target Start/End: Complemental strand, 36544411 - 36544132
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||| ||| |||||||||||||||||||| || |||| | |||||||||| ||||| ||||||||||| ||  ||||||||||  |||||||||    
T  36544411 cacaaaatctatctcggtactctatcatacgcctttcc-aaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtc 36544313  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  36544312 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 36544213  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||||    
T  36544212 ttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaattttgtatatcccccttgttcttata 36544132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 440 - 674
Target Start/End: Original strand, 42855035 - 42855271
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt--atctgttcgatatcgctccctcacgcg 537  Q
    |||||||| |||||||| ||||||||||| |||||| |||||| | |||||||||| || |||||||||||  ||| || | |||||||||| |||||||    
T  42855035 cacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcg 42855134  T
Q  538 tcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc 637  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||  ||||||  ||||  |||||| ||||||||||||||||||||||  |    
T  42855135 tcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtcttcgctcaattttc 42855234  T
Q  638 ctttcccataacttcatggtatgactcattagcttaa 674  Q
    |||||||||||||||||||||||||||||||||||||    
T  42855235 ctttcccataacttcatggtatgactcattagcttaa 42855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 440 - 541
Target Start/End: Original strand, 36566263 - 36566364
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| | ||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  36566263 cacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 36566362  T
Q  540 ga 541  Q
    ||    
T  36566363 ga 36566364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 546
Target Start/End: Complemental strand, 6184883 - 6184814
Alignment:
Q  477 ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 546  Q
    |||||| | |||||||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||    
T  6184883 ccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtcgaagtaa 6184814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 607 - 687
Target Start/End: Complemental strand, 13588800 - 13588720
Alignment:
Q  607 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 687  Q
    ||||| |||||||||| |||||||||| | | |||||| |||||| ||||||||||||||||| ||||||| | |||||||    
T  13588800 agtctcttttcttagttttcgctcaatcatcatttcccttaactttatggtatgactcattagtttaattcacttataatt 13588720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 721
Target Start/End: Complemental strand, 31977709 - 31977595
Alignment:
Q  607 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcc 706  Q
    ||||||||| | |||||| || ||||| || |||  ||||||||| |||| |||||| || |  ||||||||  ||||||| || ||||  |||||||||    
T  31977709 agtctatttccctagtctccgttcaatcactcttgtccataactttatggcatgactaataattttaattcctttataatttgcacaattttgtatatcc 31977610  T
Q  707 cctttgttcttataa 721  Q
     ||||||||||||||    
T  31977609 tctttgttcttataa 31977595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 3e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 443 - 693
Target Start/End: Original strand, 45368651 - 45368901
Alignment:
Q  443 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 542  Q
    ||||||||||||||||||||||||||||||||| | |||| | |||||||||| || ||||  |||||||| || |||||||||||| ||||||||||||    
T  45368651 aaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatcacgcgtcgaa 45368750  T
Q  543 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 642  Q
    |||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||  |||||||||||| ||||||||||||||| ||||||||||||||    
T  45368751 gtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacatgagtctcttttcttagtcttcgttcaattaccctttc 45368850  T
Q  643 ccataacttcatggtatgactcattagcttaattcccctataattcgcgca 693  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45368851 ccataatttcatggtatgactcattagcttaattcccctataattcgcgca 45368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 24584628 - 24584911
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| |  |||||||||||||||||| |||||| | |||||| ||  || |||||||||||||| || |||||||||||| |||||||||    
T  24584628 cacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 24584727  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctc---aattac 636  Q
    ||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| ||||  ||||||  |||||||||||| | ||   ||| ||    
T  24584728 gaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataactcgagtctcctttcttagtctttgttcaataatcac 24584827  T
Q  637 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  24584828 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaattttgtatatcccctttgttcttata 24584911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 447 - 720
Target Start/End: Complemental strand, 8180046 - 8179773
Alignment:
Q  447 tctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 546  Q
    ||||||| |||||||||||||||| |||  |||||| | ||||||| || ||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  8180046 tctctctcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaa 8179947  T
Q  547 gtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccat 646  Q
    |||| |  ||| |||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||    
T  8179946 gtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccat 8179847  T
Q  647 aacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||| | |||||||||||    
T  8179846 aacttcatggtatgacttattagcttaattcccctataattcgcgcaattttgtatatcctccttgttcttata 8179773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 440 - 687
Target Start/End: Original strand, 452638 - 452885
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||| ||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  452638 cacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 452737  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  452738 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 452837  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataatt 687  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  452838 ttctcgtaacttcatggtatgactcattagcttaattcccctataatt 452885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 539 - 721
Target Start/End: Complemental strand, 13148482 - 13148301
Alignment:
Q  539 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 638  Q
    |||||||||||| || |||||||||| |||  || |||||||||| |||||  ||||||  ||||  |||||| ||||||||||||||  ||||| ||||    
T  13148482 cgaagtaagtagatcgcttccatagttgaca-cctaggcataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccc 13148384  T
Q  639 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 721  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| |  |||||  ||||||||||||||||||||||||    
T  13148383 tttcccataacttcatggtaagactcattagtttaattcccctataatccaagcaattttgtatatcccctttgttcttataa 13148301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 490 - 720
Target Start/End: Complemental strand, 37281316 - 37281087
Alignment:
Q  490 aactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 589  Q
    |||||||||||| ||||||||||  |   || |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| ||||||||||||    
T  37281316 aactaattgcaaatcttttttattcgcatgacatcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaat 37281217  T
Q  590 aagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcg 689  Q
      ||||||  |||| | ||| | ||| ||||||||||| ||||| ||  |||  |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  37281216 tggttatcagtaacttaagtttgtttacttagtcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaattctcctataattcg 37281117  T
Q  690 cgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||  ||||||||||| |||||||||||    
T  37281116 cgcaattttgtatatcccc-ttgttcttata 37281087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 440 - 525
Target Start/End: Complemental strand, 2609788 - 2609703
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcg 525  Q
    ||||||||||||||  | |||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || ||||||||    
T  2609788 cacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcg 2609703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 14769560 - 14769487
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 513  Q
    |||||||||||||||| |||| ||||||||| |||| |||||| | ||||||| || |||||||||||||||||    
T  14769560 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 14769487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 13148583 - 13148540
Alignment:
Q  439 tcacaaaatctctctaggtactctatcatacgccttccccaaat 482  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13148583 tcacaaaatctctctaggcactctatcacacaccttccccaaat 13148540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 3e-84; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 440 - 714
Target Start/End: Original strand, 43241403 - 43241677
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  43241403 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 43241502  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  43241503 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 43241602  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgtt 714  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||| |||||    
T  43241603 ttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaattttgtatatcccccttgtt 43241677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 440 - 721
Target Start/End: Complemental strand, 8671178 - 8670897
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 8671079  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||| ||  ||||||||| |||  || || |||||    
T  8671078 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattttttatccgtaactcgaggctcctttcttagttttctttccatcaccct 8670979  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 721  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  8670978 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcagttttgtatatcccccttgttcttataa 8670897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 51441786 - 51442066
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||  | ||||||||||||||| ||  |||||| | |||||||||| ||||||||||||||||| ||  |||||| |||| |||||||||    
T  51441786 cacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtc 51441885  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    || |||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51441886 gatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51441985  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||| |||||||||||    
T  51441986 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtgattttgtatatcccccttgttcttata 51442066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 461 - 720
Target Start/End: Original strand, 49348445 - 49348703
Alignment:
Q  461 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 560  Q
    |||||| |||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||| |  ||||||    
T  49348445 ctatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttcca 49348544  T
Q  561 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 660  Q
    |||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||||||||| |||||||||||||    
T  49348545 tagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtcttctttcgatcaccctttcccatgacttcatggtatg 49348644  T
Q  661 actcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||| |||||||||||||||||  |||||| |||| |||||||||||    
T  49348645 actcattagcttaattctcctataattcgcgcaattttgtata-cccccttgttcttata 49348703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 440 - 684
Target Start/End: Original strand, 29173551 - 29173795
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    ||||||| |||||| || |||||||||||||||||| |||||| | | |||||||| ||||||||||||||||| ||  ||||||||||| |||| ||||    
T  29173551 cacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtc 29173650  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||  |  |||||||||||||||||| |||||||||||||||| |||||||  ||||  |||||| |||||||||| |||| ||||| | |||    
T  29173651 gaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaactcgagtctcttttcttagttttcgttcaatcatcct 29173750  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctata 684  Q
    ||| |||||||| || ||| |||||||||| ||||||||||||||    
T  29173751 ttcgcataacttgattgtacgactcattagtttaattcccctata 29173795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 440 - 710
Target Start/End: Original strand, 32405486 - 32405752
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    ||||||||||||||||  |||||||||||||| || || |||| | |||||||||| ||||  ||||||||||| ||  ||||||  ||| ||||  |||    
T  32405486 cacaaaatctctctagacactctatcatacgcttttcc-aaatcaatgaaaactaagtgcacatcttttttatcagtctgatatc--tccatcacatgtc 32405582  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||| | ||||||||| ||||||   ||||   ||||  || ||| |||||||||||| |||||||| ||| |    
T  32405583 gaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaattgattattggtaactcgaatct-ttttcttagtctccgctcaatcacctt 32405681  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctt 710  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||| || ||||  |||||||| ||||    
T  32405682 ttcccataacttcatggtatgactcataaggttaatttccctataatttgcacaattttgtatatcgcctt 32405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 440 - 669
Target Start/End: Complemental strand, 45833820 - 45833593
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||| |||||||  |||||||| |||||||||  ||||| | |||||||||  | ||| |||||||||| ||| | ||||| |||| |||| ||||    
T  45833820 cacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatcacacgtc 45833721  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  ||| |||||| ||  || ||  ||||||||||||| |||||||   ||| |||||||||||  |||||||||||||||| | | |    
T  45833720 gaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatc--aaacttgagtctatttctttagtcttcgctcaatcatcat 45833623  T
Q  640 ttcccataacttcatggtatgactcattag 669  Q
    ||| ||||||||||||| ||||||| ||||    
T  45833622 ttctcataacttcatggcatgactcgttag 45833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 607 - 688
Target Start/End: Complemental strand, 11681914 - 11681833
Alignment:
Q  607 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc 688  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  11681914 agtctcttttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc 11681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 461 - 665
Target Start/End: Original strand, 35829434 - 35829638
Alignment:
Q  461 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 560  Q
    |||| ||| |||||| |||||| | |||||||||| || |  |||||||||| ||| | |||| | ||| |||  |||| |||||||||| |||||||||    
T  35829434 ctattataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatcatacgtctaagtaagtagatcacttcca 35829533  T
Q  561 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 660  Q
    |||||||||||||||||||||| | ||||  |||||   ||||  |||| | |||||||| ||| || ||||| || ||||||||||||||| |||||||    
T  35829534 tagtcgacctcccaggcataaatctaaattggttataagtaactcgagtattttttcttactctccgttcaatcactctttcccataacttcttggtatg 35829633  T
Q  661 actca 665  Q
    |||||    
T  35829634 actca 35829638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 440 - 654
Target Start/End: Original strand, 34828107 - 34828321
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||| |||  ||| |||||||| | |||  ||||| | |||||||||| ||| |||| ||||||| ||| ||||||| |||| ||   ||||    
T  34828107 cacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtc 34828206  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    |||||| |||| || |||| ||| ||||||||||   ||||||| |||||    |||   ||||   ||||| ||| ||| |||||| |||||| | |||    
T  34828207 gaagtaggtagatcgcttctataatcgacctccctaacataaaatcaaattgaatattgataactcaagtctctttccttggtcttctctcaatcatcct 34828306  T
Q  640 ttcccataacttcat 654  Q
    |||||||||||||||    
T  34828307 ttcccataacttcat 34828321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 4e-83; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 2076496 - 2076776
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||| ||| ||||||||||||||||| || |||||||||||| || ||||||    
T  2076496 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtc 2076595  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  2076596 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 2076695  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||| |||||||||||    
T  2076696 ttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaattttgtatgtcccccttgttcttata 2076776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 440 - 720
Target Start/End: Complemental strand, 20318251 - 20317971
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||  ||||||||||||||||||||  |||||| | |||||||||| |||||||||| |||||| || |||||||||||| |||||||||    
T  20318251 cacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtc 20318152  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  20318151 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtcttctttcgatcaccct 20318052  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||  ||||||||||| |||||||||||    
T  20318051 ttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaattttgtatatcccccttgttcttata 20317971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 440 - 720
Target Start/End: Complemental strand, 24177784 - 24177504
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| |||||||||||||| |||||   ||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||| |||||    
T  24177784 cacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 24177685  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  ||||| |||||||||| ||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  24177684 gaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 24177585  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||    
T  24177584 ttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaattttgtatatcccccttgttcttata 24177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 486 - 720
Target Start/End: Original strand, 1288596 - 1288830
Alignment:
Q  486 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacc 585  Q
    |||||||||| |||| |||||||||||| || |||||| ||||| |||||||||||||||||||| |  |||||| | |||||||||||| |||||||||    
T  1288596 tgaaaactaagtgcatgtcttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaacc 1288695  T
Q  586 aaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 685  Q
    ||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1288696 aaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataa 1288795  T
Q  686 ttcgcgcaatgatgtatatcccctttgttcttata 720  Q
    ||||| ||||  ||||||||||| |||||||||||    
T  1288796 ttcgcacaattttgtatatcccccttgttcttata 1288830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 443 - 720
Target Start/End: Complemental strand, 27215 - 26939
Alignment:
Q  443 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 542  Q
    ||||||||| |||| | |||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| |||    
T  27215 aaaatctctttaggaaatctatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaa 27116  T
Q  543 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 642  Q
    |||||||| || ||||||||||||| ||  || |||||||||||||   ||||||  ||||   ||||| |||||||| | |||| ||||| ||||  |     
T  27115 gtaagtagatcgcttccatagtcgatct-tcaagcataaaaccaaaatggttatcagtaactcaagtcttttttcttaattttcgttcaatcacccgctt 27017  T
Q  643 ccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||  ||||  ||||||||| | |||||||||||    
T  27016 ccatgacttcatggtatgactcattaatttaattcccctataattcgaacaattttgtatatcctccttgttcttata 26939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 615 - 685
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
Q  615 ttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 685  Q
    ||||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22832091 ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa 22832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 440 - 679
Target Start/End: Complemental strand, 37123831 - 37123591
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||| |||| ||||||||||||   ||| |||||| | |||||||||| ||||  |||||||||||  |||| ||||||| |||||  |||     
T  37123831 cacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccattcgttatcgct-cctcatacgtt 37123733  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattac--c 637  Q
    | ||||||||| ||||||| || |||||| || || |||||||||||| |   ||| |  |||| ||||||| ||||||||||||||  ||||| ||       
T  37123732 gtagtaagtagatcacttctatggtcgacatctcaagcataaaaccaatttgattaacaataacttgagtctcttttcttagtcttcattcaatcacttt 37123633  T
Q  638 ctttcccataacttcatggtatgactcattagcttaattccc 679  Q
     ||| ||||||||||||||||||| |||| || |||| ||||    
T  37123632 tttttccataacttcatggtatgaatcataagtttaactccc 37123591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 614 - 687
Target Start/End: Complemental strand, 25937183 - 25937109
Alignment:
Q  614 tttcttagtcttcgctcaattacccttt-cccataacttcatggtatgactcattagcttaattcccctataatt 687  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| || ||||||  |||||||||    
T  25937183 tttcgtagtcttcgctcaattaaccttttcccataacttcatggtatgaatcataagtttaattgtcctataatt 25937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 678
Target Start/End: Original strand, 756080 - 756214
Alignment:
Q  544 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 643  Q
    ||||||| || ||||||| ||  ||||| |||||||||||  ||||   ||||| ||| | ||||||| ||||||| |||| |||||||| || ||||||    
T  756080 taagtagatcgcttccattgttaacctctcaggcataaaattaaattgattatcgttaccttgagtctcttttctttgtctccgctcaatcactctttcc 756179  T
Q  644 cataacttcatggtatgactcattagcttaattcc 678  Q
    ||||||||  ||||| ||||| | || ||||||||    
T  756180 cataacttgttggtacgactcttaagtttaattcc 756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 4e-83; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 51448731 - 51449011
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  51448731 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 51448830  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||| ||| |  |||||||||||||||||||||| ||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51448831 gaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51448930  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||||||||    
T  51448931 ttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccctcttgttcttata 51449011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 440 - 704
Target Start/End: Complemental strand, 52138088 - 52137824
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  52138088 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 52137989  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  ||| |||| ||||||||||||||||||||||||||  ||||||  ||||  || |||  ||||| |||||||  || || |||||    
T  52137988 gaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaattggttatccgtaactcgaatctcctttctgagtcttctttcgatcaccct 52137889  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatat 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  52137888 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaattttgtatat 52137824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 458 - 720
Target Start/End: Complemental strand, 38849344 - 38849082
Alignment:
Q  458 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 557  Q
    |||||||| ||||||||| |||||| | |||||||||| || |||| ||||||||| || ||| ||| |||| ||| ||||| ||||||||||  | |||    
T  38849344 actctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgctt 38849245  T
Q  558 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggt 657  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||  |||||| ||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38849244 ccatagtcgacctcccaggcataaaagaaaattagttatctgtaacccgagtctcttttcttagccttcgttcaatcactctttcccataacttcatggt 38849145  T
Q  658 atgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||| ||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  38849144 atgactcattagtttaattcccttataattcgcgcaattttgtatatcccccttgttcttata 38849082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 445 - 721
Target Start/End: Complemental strand, 3369016 - 3368742
Alignment:
Q  445 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgtcgaag 543  Q
    |||||||||||| |||||||||||| |||   |||||| |  ||||||||| |||||||||||||| ||| ||  ||||| ||||| ||| |||||||||    
T  3369016 aatctctctaggcactctatcatacacct---ccaaatcaaagaaaactaagtgcaagtctttttttatccgtctgatattgctccatcatgcgtcgaag 3368920  T
Q  544 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 643  Q
    || |||| | |||| ||||||||| ||| || ||| | ||| |||| | ||||   ||||  |||||| ||||||||||||||| ||||| ||  |||||    
T  3368919 taggtagataactttcatagtcgatctcacaagcaaataactaaattaattataagtaactcgagtctcttttcttagtcttcgttcaatcacattttcc 3368820  T
Q  644 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 721  Q
    |||||||||||||||||| | || || |||||||  ||||||||| | ||||  |||||||||   ||||||||||||    
T  3368819 cataacttcatggtatgaattataagtttaattcttctataattcacacaattttgtatatccatcttgttcttataa 3368742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 695
Target Start/End: Complemental strand, 27916753 - 27916583
Alignment:
Q  523 tcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt 622  Q
    ||||||| |||| ||| ||||||||||  |||| ||||| ||||||||   || |||||||||||||  ||||||  |||| || |||| |||||||| |    
T  27916753 tcgctccatcacacgtggaagtaagtaaatcacatccatggtcgacctt--agacataaaaccaaattggttatcactaacttgggtctcttttcttatt 27916656  T
Q  623 cttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 695  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||  ||||||||||||| ||||||    
T  27916655 cttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaat 27916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 510
Target Start/End: Complemental strand, 48221038 - 48220971
Alignment:
Q  443 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 510  Q
    ||||| |||||||| | |||||||||||  ||| |||||| | |||||||||| ||||||||||||||    
T  48221038 aaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 50630343 - 50630414
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 513  Q
    |||||||| |||| ||| |||||  |||| |||||| |||||| | |||||||||| |||||||||||||||||    
T  50630343 cacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatc 50630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 440 - 720
Target Start/End: Original strand, 13280 - 13559
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||| ||   ||||||||||  ||||||||    
T  13280 cacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtc 13379  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  | |||||||||||| ||||| ||| |    
T  13380 gaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctcttagtcttcgttcaatcaccat 13479  T
Q  640 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||||||| ||| |||||||||||    
T  13480 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtagttttgtatattccc-ttgttcttata 13559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 440 - 648
Target Start/End: Complemental strand, 30728 - 30520
Alignment:
Q  440 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 539  Q
    |||||||||||||| ||||||||||||||||||||  |||| | | |||||||||| ||||||||||||||||| ||  ||||||||| | ||||||||     
T  30728 cacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgtt 30629  T
Q  540 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 639  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||    
T  30628 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccct 30529  T
Q  640 ttcccataa 648  Q
    |||||||||    
T  30528 ttcccataa 30520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 458 - 625
Target Start/End: Original strand, 90130 - 90297
Alignment:
Q  458 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 557  Q
    |||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||| |||||   |||  |||||| ||||||| ||||||    
T  90130 actctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatcactt 90229  T
Q  558 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 625  Q
    ||||||| |||||||| ||||||||| |||||  ||||||  ||||  |||||| |||||||||||||    
T  90230 ccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtctt 90297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 579
Target Start/End: Complemental strand, 5685 - 5568
Alignment:
Q  462 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 561  Q
    |||||||||||||| |||||||| |||||||||| ||| | | ||||||||| ||   |||||||||| |||| |||  ||||||| |  || |||| ||    
T  5685 tatcatacgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatcacacgtttaagtaaggaaatcgcttcgat 5586  T
Q  562 agtcgacctcccaggcat 579  Q
    | ||||||||||| ||||    
T  5585 attcgacctcccatgcat 5568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 549
Target Start/End: Original strand, 25277 - 25340
Alignment:
Q  486 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagta 549  Q
    |||||||||  ||||||||||||||||||||| |||||| |||  |||  ||||||||||||||    
T  25277 tgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagta 25340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 633
Target Start/End: Original strand, 14931 - 15001
Alignment:
Q  563 gtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaat 633  Q
    |||||||||| || ||||||||||||| | ||||   ||| |||||||| |||| ||||||||||||||||    
T  14931 gtcgacctcctagacataaaaccaaattaattattgataatatgagtctcttttattagtcttcgctcaat 15001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 721
Target Start/End: Original strand, 20494 - 20608
Alignment:
Q  607 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcc 706  Q
    ||||||||| | |||||| || ||||| || |||  ||||||||| |||| |||||| || |  ||||||||  ||||||| || ||||  |||||||||    
T  20494 agtctatttccctagtctccgttcaatcactcttgtccataactttatggcatgactaataattttaattcctttataatttgcacaattttgtatatcc 20593  T
Q  707 cctttgttcttataa 721  Q
     ||||||||||||||    
T  20594 tctttgttcttataa 20608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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