View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6635_high_20 (Length: 313)
Name: NF6635_high_20
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 102 - 295
Target Start/End: Complemental strand, 27316415 - 27316218
Alignment:
| Q |
102 |
taattttaccactcccatggtccctaaataacaaaattttgtcacctcaatcatcatacgagaaaatcttcttccttctgaaaa-----tcaaacattca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
27316415 |
taattttaccactcccatggtccctaaataacaaaattttgtcacctcaatcat---atgagaaatt-ttcttccttctgaaaaatcaatcaaacattca |
27316320 |
T |
|
| Q |
197 |
gtttctgaaaatcttcttccaaattatgagtatcttaaccaaacaattacaaactaaatgttgccgaaaactcaaaaacac---catcgtcagagccata |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27316319 |
gtttctgaaaatcttcttccaaattatgagtatcttaaccaaacaattacaaactaaatgttgccgaaaactcaaaaacaccatcatcgtcagagccata |
27316220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 27316546 - 27316490
Alignment:
| Q |
14 |
agggaaatcgttaattttactaaataatacaaattcaattagttaatttatcggtta |
70 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27316546 |
agggaaaccgttaattttactaaataatacaaattcaattagttaatttatccgtta |
27316490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 3540648 - 3540608
Alignment:
| Q |
25 |
taattttactaaataatacaaattcaattagttaatttatc |
65 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
3540648 |
taattttactaaatactacaaattcaattagttgatttatc |
3540608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University