View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_high_25 (Length: 275)
Name: NF6635_high_25
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 26733813 - 26733566
Alignment:
| Q |
19 |
aaaggtgtccgaagagtggaacttgcgtcacgttcaaagcaatcacacgttgatcttcgtcgcattttacaccggaaaatgaacagtgagctgaagcaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733813 |
aaaggtgtccgaagagtggaacttgcgtcacgttcaaagcaatcacacgttgatcttcgtcgcattttacaccggaaaatgaacagtgagctgaagcaga |
26733714 |
T |
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| Q |
119 |
agttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatcattatttaatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26733713 |
agttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatcattatttaatgaa |
26733614 |
T |
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| Q |
219 |
taacacgttgtaaataacatgcacaatagtagcaaataacatgtgatg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733613 |
taacacgttgtaaataacatgcacaatagtagcaaataacatgtgatg |
26733566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 26725499 - 26725252
Alignment:
| Q |
19 |
aaaggtgtccgaagagtggaacttgcgtcacgttcaaagcaatcacacgttgatcttcgtcgcattttacaccggaaaatgaacagtgagctgaagcaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
26725499 |
aaaggtgtccgaagagtggaacttgcgtcacgtttagagcaatcactcgttgttctccgtcgcatttgacaccggaaaatgaacagtgacctgaagcaga |
26725400 |
T |
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| Q |
119 |
agttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatcattatttaatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26725399 |
agttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatcattatttaatgaa |
26725300 |
T |
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| Q |
219 |
taacacgttgtaaataacatgcacaatagtagcaaataacatgtgatg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26725299 |
taacacgttgtaaataacatgcacaatagtagcaaataacatgtgatg |
26725252 |
T |
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