View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6635_high_38 (Length: 221)

Name: NF6635_high_38
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6635_high_38
NF6635_high_38
[»] chr8 (6 HSPs)
chr8 (1-211)||(27316634-27316843)
chr8 (51-133)||(43408522-43408603)
chr8 (37-132)||(41470062-41470157)
chr8 (40-82)||(10424440-10424482)
chr8 (41-103)||(13895967-13896029)
chr8 (51-164)||(38288898-38289011)
[»] chr3 (10 HSPs)
chr3 (15-174)||(37083781-37083941)
chr3 (51-132)||(36879066-36879147)
chr3 (51-132)||(38684784-38684865)
chr3 (44-99)||(29296776-29296831)
chr3 (51-113)||(9198207-9198269)
chr3 (20-97)||(20873187-20873264)
chr3 (26-119)||(53751473-53751566)
chr3 (39-103)||(21366442-21366506)
chr3 (51-103)||(31466024-31466076)
chr3 (55-131)||(44560161-44560237)
[»] chr2 (5 HSPs)
chr2 (38-107)||(12359865-12359934)
chr2 (51-113)||(27679068-27679130)
chr2 (15-103)||(40909918-40910006)
chr2 (8-167)||(42139326-42139484)
chr2 (43-107)||(3841107-3841171)
[»] chr1 (6 HSPs)
chr1 (38-129)||(5951851-5951942)
chr1 (12-102)||(31117709-31117799)
chr1 (51-132)||(35058567-35058648)
chr1 (51-111)||(1415733-1415793)
chr1 (14-131)||(22593622-22593740)
chr1 (39-112)||(42747603-42747676)
[»] chr6 (3 HSPs)
chr6 (51-133)||(9618506-9618588)
chr6 (39-118)||(33757778-33757857)
chr6 (37-82)||(9749953-9749998)
[»] chr4 (11 HSPs)
chr4 (51-133)||(39276330-39276412)
chr4 (13-174)||(52831389-52831550)
chr4 (20-130)||(21501595-21501704)
chr4 (51-107)||(50570376-50570432)
chr4 (38-108)||(3535168-3535238)
chr4 (37-99)||(33889355-33889417)
chr4 (20-167)||(20988802-20988950)
chr4 (27-103)||(31736137-31736213)
chr4 (87-149)||(13615271-13615332)
chr4 (69-174)||(31235522-31235625)
chr4 (51-131)||(23051683-23051763)
[»] chr7 (9 HSPs)
chr7 (22-103)||(26769193-26769274)
chr7 (8-92)||(13438415-13438499)
chr7 (51-164)||(18654709-18654822)
chr7 (69-113)||(43911240-43911284)
chr7 (50-113)||(44235512-44235575)
chr7 (44-110)||(883739-883805)
chr7 (44-110)||(1243068-1243134)
chr7 (51-129)||(18654127-18654205)
chr7 (38-107)||(28175590-28175659)
[»] chr5 (8 HSPs)
chr5 (15-130)||(16869929-16870044)
chr5 (43-104)||(25618282-25618343)
chr5 (51-131)||(34639762-34639842)
chr5 (43-104)||(25617620-25617681)
chr5 (15-131)||(1621533-1621649)
chr5 (9-113)||(29226037-29226140)
chr5 (15-106)||(19461787-19461878)
chr5 (69-109)||(1298110-1298150)
[»] scaffold0040 (1 HSPs)
scaffold0040 (15-132)||(49883-50000)
[»] scaffold0010 (1 HSPs)
scaffold0010 (71-111)||(166589-166629)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27316634 - 27316843
Alignment:
Q  1 aactaaaattataggggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27316634 aactaaaattataggggtcaaattgtgataaaatattataagctataaactacttgaattaacttaccaaaaaatgctataagctaataaaaataagata 27316733  T
Q  101 taaactcgtgagacaatgattgttaccaaacgaacattttctaatcatatgaggttataagacataaactataaaattaaaaaagtgttttatcaaacag 200  Q
    ||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  27316734 taaactcgtgagagaatgattattaccaaacg-accttttctaatcatatgaggttataagacataaactataaaatcaaaaaagtgttttaccaaacag 27316832  T
Q  201 actgatgatgt 211  Q
    | | |||||||    
T  27316833 attcatgatgt 27316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 43408603 - 43408522
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacga 133  Q
    ||||||||||| |||| |||||| |||||| | ||| | |||||||||||||| ||| ||||| |||||| ||||||||||||    
T  43408603 tacttgaattagcttatcaaaaa-tgctattatctagtgaaaataagttataagctcatgagaaaatgatggttaccaaacga 43408522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 41470157 - 41470062
Alignment:
Q  37 tataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacg 132  Q
    |||||| |||||  ||||||| ||| ||||  ||||||  |||| ||||| ||||| |||||||||| ||||||||| |||||  |||||||||||    
T  41470157 tataagctataagctacttgagttagcttataaaaaaacactatgagctagtaaaattaagttataagctcgtgagaaaatgacagttaccaaacg 41470062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 10424482 - 10424440
Alignment:
Q  40 aagttataaattacttgaattaacttaccaaaaaatgctataa 82  Q
    |||||||||| |||||||| ||||||||| |||||||||||||    
T  10424482 aagttataaactacttgaactaacttacccaaaaatgctataa 10424440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 13895967 - 13896029
Alignment:
Q  41 agttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataa 103  Q
    |||||||| ||||||||||||||||| ||||||   |||||| || || ||||||||||||||    
T  13895967 agttataagttacttgaattaacttatcaaaaacaactataaactcatgaaaataagttataa 13896029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 38288898 - 38289011
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacgaacattttctaatcatat 150  Q
    ||||||||||| |||| || |||  | |||||||| ||||||||||  ||||| ||| ||| | |||||||||||| |||||||  |||| || ||| ||    
T  38288898 tacttgaattagcttatcacaaacagttataagcttataaaaataatctataagctcatgaaaaaatgattgttacgaaacgaattttttttagtcaaat 38288997  T
Q  151 gaggttataagaca 164  Q
     || ||||||||||    
T  38288998 aagcttataagaca 38289011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 37083941 - 37083781
Alignment:
Q  15 gggtcaaattgtgataaaa-tattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgaga 113  Q
    |||| |||||||||||||| ||| ||||| |||||  ||||||||||| ||||  ||||| |||||||||||| |||||||||| ||||| |||||||||    
T  37083941 gggtaaaattgtgataaaaatatgataagctataagctacttgaattagcttattaaaaattgctataagctagtaaaaataagctataagctcgtgaga 37083842  T
Q  114 caatgattgttaccaaacgaacattttctaatcatatgaggttataagacataaactataa 174  Q
     | |||  |||||| ||||    |||| |||||| ||||| ||||||||||||| ||||||    
T  37083841 aagtgacagttacctaacgtgtcttttttaatcaaatgagcttataagacataagctataa 37083781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 36879066 - 36879147
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacg 132  Q
    ||||||||||| ||||  |||||||||||||||||| |||||||||||||||| | | ||||| | |||  |||||||||||    
T  36879066 tacttgaattagcttataaaaaaatgctataagctagtaaaaataagttataatcccatgagaaagtgacagttaccaaacg 36879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 38684784 - 38684865
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacg 132  Q
    ||||||||||| |||| ||||||| ||||||||||| ||||||||| ||| || ||| ||||| |||||  |||||||||||    
T  38684784 tacttgaattagcttatcaaaaaacgctataagctagtaaaaataatttacaagctcctgagaaaatgacggttaccaaacg 38684865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 29296776 - 29296831
Alignment:
Q  44 tataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagtt 99  Q
    |||||| || ||||||||||||| ||| |||||||||||| | |||||||||||||    
T  29296776 tataaactatttgaattaacttatcaataaatgctataagattataaaaataagtt 29296831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 9198207 - 9198269
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgaga 113  Q
    ||||||||||| |||| ||||||  ||||||||||| |||||||||| | ||| |||||||||    
T  9198207 tacttgaattagcttatcaaaaaccgctataagctagtaaaaataagctttaagctcgtgaga 9198269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 20873187 - 20873264
Alignment:
Q  20 aaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataag 97  Q
    |||||| ||||||  || ||||| ||||| |||||||||||| |||| ||||||   |||||||||| ||||||||||    
T  20873187 aaattgggataaataatgataagctataagttacttgaattagcttatcaaaaaccactataagctagtaaaaataag 20873264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 53751566 - 53751473
Alignment:
Q  26 tgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatga 119  Q
    |||||| ||||  |||||| ||| |||||| ||||||||||  |||| |   |||||| ||||| ||||||| ||||||||||||||| |||||    
T  53751566 tgataacatatagtaagttttaagttacttaaattaacttataaaaatacagtataagttaatataaataagctataaactcgtgagaaaatga 53751473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 21366506 - 21366442
Alignment:
Q  39 taagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataa 103  Q
    |||||||||| ||||||||||||||||  ||||||| | || ||| |  ||||||||||||||||    
T  21366506 taagttataagttacttgaattaacttgtcaaaaaacgttacaagttggtaaaaataagttataa 21366442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 31466024 - 31466076
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataa 103  Q
    |||||||||||| ||| |||||||  |||||||||| |||||||||| |||||    
T  31466024 tacttgaattaaattatcaaaaaacactataagctagtaaaaataagatataa 31466076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 44560237 - 44560161
Alignment:
Q  55 tgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaac 131  Q
    ||||||| |||| |||||||  || || | || ||||||||| |||||||||||||||| |||||  ||||||||||    
T  44560237 tgaattagcttatcaaaaaacactttaggatagtaaaaataaattataaactcgtgagaaaatgacggttaccaaac 44560161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 12359865 - 12359934
Alignment:
Q  38 ataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactc 107  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||  |||||||||    
T  12359865 ataagttataaactacttgaattaacttatcaaaaaatgttataagctagtaaaaataacctataaactc 12359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 27679130 - 27679068
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgaga 113  Q
    ||||||||||| ||||  |||||| ||||||||||| |||||||||| ||||| |||||||||    
T  27679130 tacttgaattagcttattaaaaaacgctataagctagtaaaaataagctataagctcgtgaga 27679068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 40910006 - 40909918
Alignment:
Q  15 gggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataa 103  Q
    |||| |||||| |||||||  | ||||  |||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||    
T  40910006 gggtaaaattgagataaaaagtgataacctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagttataa 40909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 42139484 - 42139326
Alignment:
Q  8 attataggggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactc 107  Q
    |||| |||||| |||||| ||||||  || ||||| |||||  ||||||||||| |||  |||||   |||||||||||||||||||||| ||||| ||     
T  42139484 attagaggggtaaaattgagataaataatgataagctataatctacttgaattagcttgacaaaacc-gctataagctaataaaaataagctataagctt 42139386  T
Q  108 gtgagacaatgattgttaccaaacgaacattttctaatcatatgaggttataagacataa 167  Q
    |||||| | |||   |||||||||    ||||| || ||| ||||| |||||||||||||    
T  42139385 gtgagaaagtgacaattaccaaacatgtattttttagtcaaatgagcttataagacataa 42139326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 3841107 - 3841171
Alignment:
Q  43 ttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactc 107  Q
    ||||||||||  |||||||||||| ||||||||  | ||||||  |||||||||| |||||||||    
T  3841107 ttataaattatctgaattaacttatcaaaaaatcttttaagcttgtaaaaataagctataaactc 3841171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 5951851 - 5951942
Alignment:
Q  38 ataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaa 129  Q
    ||||||||||||||| |||||||| |||| |  |||  |||||||||| ||||||||||| |||||  |||||||| |||||||||||||||    
T  5951851 ataagttataaattatttgaattagcttatctcaaaccgctataagctcataaaaataagctataagatcgtgagagaatgattgttaccaa 5951942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 31117709 - 31117799
Alignment:
Q  12 taggggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttata 102  Q
    ||||||| |||||| |||||||  | ||| | |||||  ||||||||||| |||| ||||||| |||||||||| |||||| |||||||||    
T  31117709 taggggtaaaattgagataaaaattgataggctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagttata 31117799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 35058648 - 35058567
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacg 132  Q
    ||||||||||| ||||| |||||  |||||||||   |||||||||| ||||| ||||||||  ||||| ||||||||||||    
T  35058648 tacttgaattagcttactaaaaaccgctataagcccgtaaaaataagctataagctcgtgagcaaatgactgttaccaaacg 35058567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 1415793 - 1415733
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtga 111  Q
    ||||||||||| |||| ||||||| |||||||  ||||||||||||| ||||| |||||||    
T  1415793 tacttgaattagcttatcaaaaaacgctataaattaataaaaataagctataagctcgtga 1415733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 22593622 - 22593740
Alignment:
Q  14 ggggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaa-tgctataagctaataaaaataagttataaactcgtgag 112  Q
    ||||| |||||  ||||||| || ||||| |||||  ||||||||||| |||| | ||||| ||||||||||| ||||||||||| || |  ||||||||    
T  22593622 ggggtaaaattaggataaaaaatgataagctataagctacttgaattagcttatcgaaaaactgctataagctgataaaaataagctacaggctcgtgag 22593721  T
Q  113 acaatgattgttaccaaac 131  Q
    | | |||  ||||||||||    
T  22593722 aaagtgacggttaccaaac 22593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 42747676 - 42747603
Alignment:
Q  39 taagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgag 112  Q
    |||||||||| |||||||||||| ||||  ||||||  ||||||||| |||||| |||| ||||| || |||||    
T  42747676 taagttataagttacttgaattagcttataaaaaaacactataagctcataaaattaagctataagcttgtgag 42747603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 9618506 - 9618588
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacga 133  Q
    ||||||||||| ||||  ||||||| |||||||||  |||||| ||| ||||||||||||||| |||||||||| ||||||||    
T  9618506 tacttgaattagcttataaaaaaatactataagcttgtaaaaacaagctataaactcgtgagaaaatgattgttgccaaacga 9618588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 33757778 - 33757857
Alignment:
Q  39 taagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatg 118  Q
    |||| ||||||||||||||||||||||  || ||| ||||||||  | ||||||||||| |||||  |||||||| ||||    
T  33757778 taagctataaattacttgaattaacttgtcataaactgctataaattcataaaaataagctataagttcgtgagaaaatg 33757857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 9749953 - 9749998
Alignment:
Q  37 tataagttataaattacttgaattaacttaccaaaaaatgctataa 82  Q
    ||||||||||||  |||||||||||||||| ||||||| |||||||    
T  9749953 tataagttataacctacttgaattaacttatcaaaaaacgctataa 9749998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 39276412 - 39276330
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacga 133  Q
    ||||||||||| |||| ||||||| | ||||||||| |||||||||||||||| ||||||||| |||||  |||| |||||||    
T  39276412 tacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagttatcaaacga 39276330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 52831550 - 52831389
Alignment:
Q  13 aggggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgag 112  Q
    ||||||||||||| ||||||| || ||||| |||||  ||||||||||| |||| ||||||    |||||||| || |||||||| || || ||||||      
T  52831550 aggggtcaaattgagataaaaaatgataagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaagctcgtgta 52831451  T
Q  113 acaatgattgttaccaaacgaacattttctaatcatatgaggttataagacataaactataa 174  Q
    | |||||  |||||||||| |   |||| |||||||||||| |||||||  |||||||||||    
T  52831450 aaaatgaccgttaccaaacaagttttttttaatcatatgagcttataagctataaactataa 52831389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 21501704 - 21501595
Alignment:
Q  20 aaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatga 119  Q
    |||||| ||||||| |||||||| |||||  ||||||||||| |||| |||||||  ||||| |||| |||||||||| ||||| ||||||||| | |||    
T  21501704 aaattgggataaaa-attataagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctataagctcgtgagaaagtga 21501606  T
Q  120 ttgttaccaaa 130  Q
      |||||||||    
T  21501605 cagttaccaaa 21501595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 50570376 - 50570432
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactc 107  Q
    |||||||| || |||| ||||||||| ||||| ||||||||||||||||||||||||    
T  50570376 tacttgaagtagcttatcaaaaaatgttataatctaataaaaataagttataaactc 50570432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 3535238 - 3535168
Alignment:
Q  38 ataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcg 108  Q
    ||||| |||||  ||||||||||| |||| ||||||| |||||||| || |||||||||| ||||||||||    
T  3535238 ataagctataagctacttgaattagcttatcaaaaaacgctataagttagtaaaaataagctataaactcg 3535168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 33889417 - 33889355
Alignment:
Q  37 tataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagtt 99  Q
    ||||||||||||  ||||||||||||||||  |||||||| |||| |||||| ||||||||||    
T  33889417 tataagttataagctacttgaattaacttataaaaaaatgttataggctaatgaaaataagtt 33889355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 20988802 - 20988950
Alignment:
Q  20 aaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaa-ctcgtgagacaatg 118  Q
    |||||| ||||||| || ||||| |||||  ||||||||||| |||| ||||||||||||  ||  | |||||||||| |||||| ||| ||||| | ||    
T  20988802 aaattgagataaaaaatgataagctataagctacttgaattagcttatcaaaaaatgctaatagtcagtaaaaataagctataaagctcatgagaaagtg 20988901  T
Q  119 attgttaccaaacgaacattttctaatcatatgaggttataagacataa 167  Q
    |  |||||||||||    |||| || ||| ||||| |||||||||||||    
T  20988902 acggttaccaaacgtgtcttttttagtcaaatgagcttataagacataa 20988950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 31736137 - 31736213
Alignment:
Q  27 gataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataa 103  Q
    ||||||| |||||||| |||||| ||||||||||| ||||  |||||  | |||||||| || ||||||||||||||    
T  31736137 gataaaaaattataagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagttataa 31736213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 13615271 - 13615332
Alignment:
Q  87 ataaaaataagttataaactcgtgagacaatgattgttaccaaacgaacattttctaatcata 149  Q
    ||||||||||| ||||||||||||||| |||||  ||||| ||||| || |||||||||||||    
T  13615271 ataaaaataaggtataaactcgtgagaaaatgacagttactaaacg-actttttctaatcata 13615332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 31235522 - 31235625
Alignment:
Q  69 aaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacgaacattttctaatcatatgaggttataagacataaa 168  Q
    |||||||| |||||||||||||| ||||  ||||| ||||||||| | |||  |||||||||  |||||||| |  ||| ||||| || ||||||||||     
T  31235522 aaaaaatgatataagctaataaagataatctataagctcgtgagaaagtgacggttaccaaa--aacattttttggtcaaatgagcttgtaagacataag 31235619  T
Q  169 ctataa 174  Q
    ||||||    
T  31235620 ctataa 31235625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 23051683 - 23051763
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaac 131  Q
    ||||||||||| |||| || |||  ||||||| || ||||||||||| | ||| ||||||||| | ||| |||||||||||    
T  23051683 tacttgaattagcttatcacaaaccgctataaactcataaaaataagctgtaagctcgtgagaaagtgactgttaccaaac 23051763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 26769274 - 26769193
Alignment:
Q  22 attgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataa 103  Q
    |||||||||||  || |||| ||||||| ||||| |||||||||| |||||||||||||||| ||||||||| ||| |||||    
T  26769274 attgtgataaataatgataaattataaagtactttaattaacttatcaaaaaatgctataagttaataaaaacaagctataa 26769193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 13438415 - 13438499
Alignment:
Q  8 attataggggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaa 92  Q
    |||| |||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||||  |||||| |||||| |||| |||||    
T  13438415 attaaaggggtaaaattgtgataaaatatgataagctataagttacttgaattatcttataaaaaaacgctatatgctagtaaaa 13438499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 18654709 - 18654822
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaacgaacattttctaatcatat 150  Q
    ||||||||||| |||| || |||   ||||||||| ||||||||||  ||||||||| ||||| |||||  |||| |||| |||  |||| |||||| ||    
T  18654709 tacttgaattagcttatcacaaacaactataagctcataaaaataatctataaactcatgagaaaatgaccgttatcaaaggaatcttttttaatcaaat 18654808  T
Q  151 gaggttataagaca 164  Q
    ||| ||||||||||    
T  18654809 gagcttataagaca 18654822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 43911240 - 43911284
Alignment:
Q  69 aaaaaatgctataagctaataaaaataagttataaactcgtgaga 113  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||    
T  43911240 aaaatatgccataagctagtaaaaataagttataaactcgtgaga 43911284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 44235512 - 44235575
Alignment:
Q  50 ttacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgaga 113  Q
    ||||||||||||||||| |||||||  ||||||||| || |||||||| ||||| ||| |||||    
T  44235512 ttacttgaattaacttatcaaaaaacactataagctcattaaaataagctataagctcttgaga 44235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 883805 - 883739
Alignment:
Q  44 tataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtg 110  Q
    |||||| |||||||||||||||| || ||| | ||||| ||| || |||||||||||||| ||||||    
T  883805 tataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtg 883739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 1243134 - 1243068
Alignment:
Q  44 tataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtg 110  Q
    |||||| |||||||||||||||| || ||| | ||||| ||| || |||||||||||||| ||||||    
T  1243134 tataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtg 1243068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 18654205 - 18654127
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaa 129  Q
    ||||||||||| |||| || |||  |||||||||| ||||||||||  ||||||||| ||| | ||||| |||||||||    
T  18654205 tacttgaattagcttatcagaaacagctataagcttataaaaataatctataaactcatgaaaaaatgactgttaccaa 18654127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 28175590 - 28175659
Alignment:
Q  38 ataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactc 107  Q
    ||||| |||||  ||||||| ||| |||| |||| || |||||||||| ||||||||||| |||||||||    
T  28175590 ataagctataagctacttgagttagcttatcaaagaaagctataagctcataaaaataagctataaactc 28175659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 16869929 - 16870044
Alignment:
Q  15 gggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagac 114  Q
    |||| ||||||  |||||| || ||||| |||||  ||||||||||| |||| ||||||| ||||||||||| |||||||||| |||||  ||||||||     
T  16869929 gggtaaaattgaaataaaaaatgataagctataagctacttgaattagcttatcaaaaaacgctataagctagtaaaaataaggtataagttcgtgagaa 16870028  T
Q  115 aatgattgttaccaaa 130  Q
    | |||| | |||||||    
T  16870029 agtgatagataccaaa 16870044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 25618343 - 25618282
Alignment:
Q  43 ttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaa 104  Q
    |||||||||||||||||||||||  |||||| |||| ||| |||||||||||||| ||||||    
T  25618343 ttataaattacttgaattaacttttcaaaaactgctctaaactaataaaaataagctataaa 25618282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 34639842 - 34639762
Alignment:
Q  51 tacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagacaatgattgttaccaaac 131  Q
    ||||||||||| |||| ||||| |||||||||  || |||||| ||||||||| || |||||| |||||||||||| ||||    
T  34639842 tacttgaattagcttatcaaaagatgctataacatactaaaaaaaagttataagctggtgagaaaatgattgttacgaaac 34639762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 25617681 - 25617620
Alignment:
Q  43 ttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaa 104  Q
    |||||||||| ||||||||||||  |||||| |||| ||| |||||||||||||| ||||||    
T  25617681 ttataaattatttgaattaacttttcaaaaactgctctaaactaataaaaataagctataaa 25617620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 1621533 - 1621649
Alignment:
Q  15 gggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagac 114  Q
    |||| |||||| |||||||  | ||||| |||||  ||||||||||| |||| ||||||| |||| ||||  ||||||||||| ||||| ||| ||||      
T  1621533 gggtaaaattgagataaaaactgataagctataagctacttgaattagcttatcaaaaaacgctaaaagcacataaaaataagctataagctcttgagga 1621632  T
Q  115 aatgattgttaccaaac 131  Q
    |||||  ||||||||||    
T  1621633 aatgacggttaccaaac 1621649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 29226037 - 29226140
Alignment:
Q  9 ttataggggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcg 108  Q
    ||||| |||| |||||| ||||||| || | |||||| ||  ||||| ||||| |||| || |||||| |||||| || |||||||||| ||||||||||    
T  29226037 ttataagggtaaaattgagataaaa-atcaaaagttacaagctactttaattaccttatcataaaatgttataagttagtaaaaataagctataaactcg 29226135  T
Q  109 tgaga 113  Q
    |||||    
T  29226136 tgaga 29226140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 19461787 - 19461878
Alignment:
Q  15 gggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaact 106  Q
    |||| |||||| ||||||| |||||||||||| |  | ||||||||| |||| ||||  | | ||||||||| |||||||||| ||||||||    
T  19461787 gggtaaaattgagataaaaaattataagttatcagcttcttgaattagcttatcaaattaagttataagctagtaaaaataaggtataaact 19461878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 1298110 - 1298150
Alignment:
Q  69 aaaaaatgctataagctaataaaaataagttataaactcgt 109  Q
    |||| ||| ||||| ||||||||||||||||||||||||||    
T  1298110 aaaagatgttataaactaataaaaataagttataaactcgt 1298150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 49883 - 50000
Alignment:
Q  15 gggtcaaattgtgataaaatattataagttataaattacttgaattaacttaccaaaaaatgctataagctaataaaaataagttataaactcgtgagac 114  Q
    |||| |||||| |||||||  | ||||| |||||  ||||||||||| |||| || |||  ||||||||||  |||||||||| ||||| |||||||||     
T  49883 gggtaaaattgagataaaaagtgataagctataagctacttgaattagcttatcacaaaccgctataagctcttaaaaataagctataagctcgtgagaa 49982  T
Q  115 aatgattgttaccaaacg 132  Q
    | |||  |||||||||||    
T  49983 agtgaccgttaccaaacg 50000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 166629 - 166589
Alignment:
Q  71 aaaatgctataagctaataaaaataagttataaactcgtga 111  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  166629 aaaacgctataagctagtaaaaataagttataagctcgtga 166589  T

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