View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_high_9 (Length: 442)
Name: NF6635_high_9
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 8446922 - 8447340
Alignment:
| Q |
18 |
catcaagcactttcttgagcttttctttactctgtcgaattgctccttcgtcttgtttgatcttcattcgaggagcaaatgcaagctgaaacaccagagt |
117 |
Q |
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| T |
8446922 |
catcaagcactttcttgagcttttctttactctgtcgaattgctccttcgtcttgtttgatcttcattcgaggagcaaatgcaagctgaaacaccagagt |
8447021 |
T |
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| Q |
118 |
tgaagaaggtggattgaagctttgtccttcagcttctaaccattgatctattgaagcctttgccaatggatttgtatcatacagttgtttgttccctttc |
217 |
Q |
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| T |
8447022 |
tgaagaaggtggattgaagctttgtccttcagcttctaaccattgatctattgaagcctttgccaatggatttgtaccatacagttgtttgttccctttc |
8447121 |
T |
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| Q |
218 |
tctctatttttctcacatacgtaccgacatatagctcttgactctgatgttatacaattaaaattgaaaatactaattgattattaattaagtaagaagc |
317 |
Q |
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| T |
8447122 |
tctatatttttctcgcatacgtaccgacatatcgctcttgactctgatgttatacaatttaaattgaaaatactaattgattattaattaagtaagaagc |
8447221 |
T |
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| Q |
318 |
aactgatt-aattaatgaatgaattacttaccgaagagagaaatgtcgtgatcttgatatgcaggtacttgaccaaatggctgaaaattaaacaagcaat |
416 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8447222 |
aactgattaaattaattaatgaattacttaccgaagagagaaatgtcgtgatcttgatatgcaggtacttgaccaaatggctgaaaattaaacaagcaat |
8447321 |
T |
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| Q |
417 |
gt-gaaaattatgatgatg |
434 |
Q |
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| T |
8447322 |
gtcaaaaattatgatgatg |
8447340 |
T |
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