View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_1 (Length: 873)
Name: NF6635_low_1
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 818; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 1 - 858
Target Start/End: Original strand, 40410542 - 40411399
Alignment:
| Q |
1 |
tagtgtggaatttgatattactggtcctagacttgatcatagcatatctgattcgggggtgattcagttgacaggtgaagatcattcttcagttttgcca |
100 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40410542 |
tagtgtggaaattgatattactggtcatagacttgatcatagcatatctgattcgggggtgattcagttgacaggtgaagatcattcttcagttttgcca |
40410641 |
T |
|
| Q |
101 |
gaacttcaaaaggtggaatccgatgttggtcggagatattatgattttgaagatgatcaaccaacaattgaagattcggctgatttgtcggaatatggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40410642 |
gaacttcaaaaggtggaatccgatgttggtcggagatattatgattttgaagatgatcaaccaacaattgaagattcggctgatttgtcggaatatggag |
40410741 |
T |
|
| Q |
201 |
agaatgttgtggacttgcagggttctaatccggaggtgatcttggttagtgttgacggtcatatattgacagcccctatctaagaattagcgccaactga |
300 |
Q |
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| T |
40410742 |
agaatgttgtggacttgcagggttccaatccggaggtgatcttggttagtgttgacggtcatatattgacagcccctatctcagaattagagccaactga |
40410841 |
T |
|
| Q |
301 |
ggaaaatttgcagtcacaaattcctcaatttcacttgggaccaggtgaagggactgatttctatgaaggcaatgaggagtttagttctggcgaaaatgca |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40410842 |
ggaaaatttgcagtcacaaattcctcaatttcatttgggaccaggtgaagggactgatttctatgaaggcaatgaggagtttagttctggcgaaaatgca |
40410941 |
T |
|
| Q |
401 |
cgtgttgctgattatgttagtaggccggatgcttcaacagctgatgttccatccagtatttatagctctgatatcggtaatagtgcttccggggtccagc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40410942 |
cgtgttgctgattatgttagtaggccggatgcttcaacagctgatgttccatccagtatttatagctctgatatcggtaatagtgcttccggggtccagc |
40411041 |
T |
|
| Q |
501 |
tcgaaagttgccaacaagaggagggacctctttgtcacacggaggaaactggcacagaagaagctgcatcatgcatgaatacggagagtgttttcaaaag |
600 |
Q |
| |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40411042 |
ttgaaagttgccaacaagaggagggacctcttcgtcacacggaggaaactggcacagaagaagctgcatcatgcatgaatacggagagtgttttcaaaag |
40411141 |
T |
|
| Q |
601 |
ttgcttggacttaaatgaacttgctctgcaggatgataatgacaatttacaagatgaaaggtcgtcattggtggatcaaaattcagctgaggaatctaat |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40411142 |
ttgcttggacttaaatgaacttgctctgcaggatgataatgacaatttacaagatgaaaggtcgtcattggtggatcaaaattcagctgaggaatctaat |
40411241 |
T |
|
| Q |
701 |
gaaaattgttcaaattttgatgaaaatgcaaaagagagcatgaaacgatctagaaatattggcgagttatcttctatcagtggtgctacttcttcagacg |
800 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40411242 |
gaaaattgttcaaatgttgatgaaaatgcaaaagagagcatgaaacgatctagaaatattggcgagttatcttctatcagaggtgctacttcttcagacg |
40411341 |
T |
|
| Q |
801 |
acagtaattctccaaatttaaaaatagaacttcaaggggttgataaagatgcatcagt |
858 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40411342 |
acagtaattctccaaatttaaaaatagaacttcaaggggttgataaagatgcatcagt |
40411399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 29035419 - 29035505
Alignment:
| Q |
195 |
atggagagaatgttgtggacttgcagggttctaatccggaggtgatcttggttagtgttgacggtcatatattgacagcccctatct |
281 |
Q |
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||||||||||| ||| |||| |||||||||| | || ||| || ||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
29035419 |
atggagagaattctgtagactcgcagggttctcacccagagatggtcttggtgagtgttgatggtcatatattgacagctcctatct |
29035505 |
T |
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