View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_11 (Length: 419)
Name: NF6635_low_11
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 30708499 - 30708899
Alignment:
| Q |
8 |
tagataatacttcctttacagactctaagttagaaatcaaccgtaatcggaagataaactctactggtgatcgcactgacattacagtaacagatatgtt |
107 |
Q |
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| T |
30708499 |
tagataatacttcatttacagactctaagttagcaatcaaccgtaatcggaagataaactctacaggtgatcacactgacattacagtaacagatatgtt |
30708598 |
T |
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| Q |
108 |
tttgatt---catcagcggttaaagagtcagcccgtgttagcaggaaaacctccataccatacacagaca----cacctaccatctacacaaacacagca |
200 |
Q |
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| T |
30708599 |
tttgattattcatcagtggttaaagagtcagcctgtgttagcaggaaaacctccataccatacacagacagacacacctaccatctacacaaacacagca |
30708698 |
T |
|
| Q |
201 |
ggccaaagaaaacatcgtcgtgaatcactttagtaaactcctttaaaaaatatcatgtttgaacaaatgaagacataaatgatacattcaagtttacgtt |
300 |
Q |
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| T |
30708699 |
ggccaaagaaaacatcgtcgtgaatcactttagtaaactcctttaaaaaatatcatgtttgaacaaatga---cataaatgatacattcaagtttacgtt |
30708795 |
T |
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| Q |
301 |
tgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagagg |
400 |
Q |
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| T |
30708796 |
tgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagagg |
30708895 |
T |
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| Q |
401 |
atat |
404 |
Q |
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| T |
30708896 |
atat |
30708899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 404
Target Start/End: Original strand, 30699278 - 30699424
Alignment:
| Q |
252 |
atcatgtttgaacaaatgaagacataaatgatacattcaagtttacgtttgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacgg |
351 |
Q |
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| T |
30699278 |
atcatgtttaagcaaatgaagacataa-tgatacatatag--ttacctttacatgctgcgtatatcgttccagaacctacgtgtgtcagagatgcaacag |
30699374 |
T |
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| Q |
352 |
aggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatat |
404 |
Q |
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| T |
30699375 |
aggaattgaatacaatgcttc---catttccagattctttaagaagaggatat |
30699424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 30706167 - 30706259
Alignment:
| Q |
309 |
gcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatat |
404 |
Q |
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| T |
30706167 |
gcatagatgcttccagtacctacacttattagagatgcaacagaggaaatgaacacaatgcttc---catttccagattctttaagaagaggatat |
30706259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 30719150 - 30719242
Alignment:
| Q |
309 |
gcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatat |
404 |
Q |
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| T |
30719150 |
gcatagatgcttccagtacctacgcttgtcagagacccaacagaggaaatgaaaacaatgcttc---catttccagattctttaagaagaggatat |
30719242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 30705395 - 30705439
Alignment:
| Q |
75 |
tgatcgcactgacattacagtaacagatatgtttttgattcatca |
119 |
Q |
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| T |
30705395 |
tgatcacagtgacagtacagttacagatatgtttttgattcatca |
30705439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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