View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_21 (Length: 315)
Name: NF6635_low_21
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 30836167 - 30835868
Alignment:
| Q |
1 |
agagattgaaaaaattgaaattgatattcaattgataaatttgatgcttttctgtcataaattcaactgtttagtattattaatttaatttttgtatatt |
100 |
Q |
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| T |
30836167 |
agagattgaaaaaattgaaattgatattcaattgataaatttgatgcttttctgtcataaattcaactatttggtattattaatttaatttttgtatatt |
30836068 |
T |
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| Q |
101 |
cttaatatactatatagcttgtaaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcaga |
200 |
Q |
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| T |
30836067 |
cttaatatactatatagttggtaaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcaga |
30835968 |
T |
|
| Q |
201 |
gaagaaaaagttttggcaaaccccccaacacatggagggatttggacaagcatttgttatgagtgaggaacagaaacttgattgggcagatatgttttat |
300 |
Q |
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| T |
30835967 |
gaagaaaaagttttggcaaactccccaacatatggagggatttggacaagcatttgttatgagtgaggaacagaaacttgattgggcagatatgttttat |
30835868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 151 - 293
Target Start/End: Complemental strand, 30829078 - 30828936
Alignment:
| Q |
151 |
gagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaaccccccaacacatggagggatttggacaag |
250 |
Q |
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| T |
30829078 |
gagaaagtaaaattggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccatcatatggagggatttggacaag |
30828979 |
T |
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| Q |
251 |
catttgttatgagtgaggaacagaaacttgattgggcagatat |
293 |
Q |
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| T |
30828978 |
catttgttatgagtgaggaacagaaacttgattgggcagatat |
30828936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 115 - 293
Target Start/End: Complemental strand, 30854005 - 30853827
Alignment:
| Q |
115 |
tagcttgtaaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagtttt |
214 |
Q |
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||||| |||||||||| ||||||||| ||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30854005 |
tagctggtaaatcatgatgttagttcttccttggtggagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagtttt |
30853906 |
T |
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| Q |
215 |
ggcaaaccccccaacacatggagggatttggacaagcatttgttatgagtgaggaacagaaacttgattgggcagatat |
293 |
Q |
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| T |
30853905 |
ggcaaactcctcaacatatggagggatttgggcaagcatttgttgtgagtgatgaacaaaagcttgattgggcagatat |
30853827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 30841429 - 30841254
Alignment:
| Q |
116 |
agcttgtaaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttg |
215 |
Q |
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||||||||||||||| ||||||||| ||| | |||||| ||||| |||| || ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30841429 |
agcttgtaaatcatgatgttagttcttccttgttggagaaagtaaagatggaaattatggattttttcaaccttccaatgtcagagaagaaaaagttttg |
30841330 |
T |
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| Q |
216 |
gcaaaccccccaacacatggagggatttggacaagcatttgttatgagtgaggaacagaaacttgattgggcagat |
291 |
Q |
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| T |
30841329 |
gcaaactcctcaacatatggagggatttggacaagcatttgttttaagtgaagaacaaaaacttgattgggcagat |
30841254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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