View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_22 (Length: 314)
Name: NF6635_low_22
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 299
Target Start/End: Original strand, 38216550 - 38216797
Alignment:
| Q |
51 |
gttattgaaacattaatctatttattcaattttggtctgtaataataaaatcagttgaaattattttttgagggaaaaatgaaactcattgttatacatg |
150 |
Q |
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| T |
38216550 |
gttattgaaacattaatctatttattcaattttggtctgtaataataaaatcagttgaaattattttttgagggaaaaatgaaactaattgttatacatg |
38216649 |
T |
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| Q |
151 |
tagaaattttttatacgtgcattcaatcacnnnnnnnattggnnnnnnnnntctcaccaataagcgaatgctatcaaatgcatgtgcaacaaaaattata |
250 |
Q |
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| T |
38216650 |
tagaaatcttatatacgtgcattcaatcactttttttattgg-aaaaaaaatctcaccaataagtgaatgctatcaaatgcatgtgcaacaaaaattata |
38216748 |
T |
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| Q |
251 |
ttgattgtggtgtatagaaatggaattggaagtctttattcattgatat |
299 |
Q |
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| T |
38216749 |
ttgattgtggtgtatagaaatggaattagaagtctttattatttgatat |
38216797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38216493 - 38216533
Alignment:
| Q |
1 |
aacaagatttcaaaatataatattagtatcactttacatat |
41 |
Q |
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| T |
38216493 |
aacaagatttcaaaatataatattagtatcacttaacatat |
38216533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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