View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6635_low_24 (Length: 311)

Name: NF6635_low_24
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6635_low_24
NF6635_low_24
[»] chr8 (3 HSPs)
chr8 (15-292)||(13317904-13318184)
chr8 (15-72)||(36019154-36019211)
chr8 (155-201)||(36019036-36019082)
[»] chr4 (6 HSPs)
chr4 (121-279)||(55416877-55417038)
chr4 (150-288)||(48988907-48989043)
chr4 (150-236)||(26698102-26698188)
chr4 (154-258)||(48825352-48825455)
chr4 (150-282)||(53146986-53147116)
chr4 (173-283)||(31160930-31161042)
[»] chr2 (2 HSPs)
chr2 (129-281)||(9145584-9145739)
chr2 (150-245)||(26159657-26159752)
[»] chr1 (2 HSPs)
chr1 (164-283)||(52243390-52243509)
chr1 (15-67)||(6700653-6700705)
[»] chr5 (3 HSPs)
chr5 (121-288)||(513371-513541)
chr5 (15-100)||(9959476-9959560)
chr5 (171-239)||(35562637-35562704)
[»] chr3 (2 HSPs)
chr3 (153-288)||(3452236-3452371)
chr3 (150-190)||(49398-49438)
[»] chr7 (2 HSPs)
chr7 (159-259)||(34257587-34257687)
chr7 (157-201)||(41126114-41126158)
[»] chr6 (2 HSPs)
chr6 (154-201)||(12250963-12251010)
chr6 (154-255)||(1055661-1055762)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 13317904 - 13318184
Alignment:
Q  15 agaactaagaaaagaaagtatatgttacattaagtttccaaaaacaacgaaaattagcgctaaagccacaactggctcggctaagagcaccnnnnnnntt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||    
T  13317904 agaactaagaaaagaaagtatatgttacattaagtttccaaaaacaacgaaaattagcgctaaagccacagctggctcggctaagagcaccaaaaaaatt 13318003  T
Q  115 gaaaagaaaagaagctaagtagcaactcccaaac---gaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagcc 211  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13318004 gaaaagaaaagaagctaagtagcaactcccaaacacagaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccaccagcc 13318103  T
Q  212 accagaatgattgttgcttaattttgtctttaagctgatgaatagaatttccattttgttggaagactctagtgttcttgt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13318104 accagaatgattgttgcttaattttgtctttaagctgatgaatagaatttccattttgttggaagactctagtgttcttgt 13318184  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 36019211 - 36019154
Alignment:
Q  15 agaactaagaaaagaaagtatatgttacattaagtttccaaaaacaacgaaaattagc 72  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||    
T  36019211 agaactaagaagagaaagtatatgttacatcaagttttcaaaaacaacgaaaactagc 36019154  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 36019082 - 36019036
Alignment:
Q  155 gattaagccaccatgtgtggtaattaaaagcaaaattaggatgattt 201  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||    
T  36019082 gattaaaccaccatgtgtgataattaaaagcaaagttaggatgattt 36019036  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 279
Target Start/End: Complemental strand, 55417038 - 55416877
Alignment:
Q  121 aaaagaagctaagtagcaactcccaaacgaa---gaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccaga 217  Q
    ||||||||||||||||| |||||||||| ||   ||| |||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||    
T  55417038 aaaagaagctaagtagctactcccaaacaaacaagagaattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccttcaaccaccaga 55416939  T
Q  218 atgattgttgcttaattttgtctttaagctgatgaatagaatttccattttgttggaagact 279  Q
    |  ||||| |||||||||| ||| |||||||||||||| ||||| | |||||||||||||||    
T  55416938 agaattgtagcttaattttatctataagctgatgaataaaattttctttttgttggaagact 55416877  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 288
Target Start/End: Complemental strand, 48989043 - 48988907
Alignment:
Q  150 aagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaagctga 249  Q
    |||||| ||||| |||||||| ||||||| |||||||||||||||||||||  ||  || |||||||||||||||||  ||||  ||||||  ||| | |    
T  48989043 aagagggttaagtcaccatgtatggtaatgaaaagcaaaattaggatgattggccttcaaccaccagaatgattgttttttaa--ttgtctaaaagttaa 48988946  T
Q  250 tgaatagaatttccattttgttggaagactctagtgttc 288  Q
      ||||| |||||| ||||||||||||||||||| ||||    
T  48988945 ctaatagtatttcccttttgttggaagactctagagttc 48988907  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 26698188 - 26698102
Alignment:
Q  150 aagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaatttt 236  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||||||  |  || ||||||||| |||||  ||||||||||    
T  26698188 aagaggattaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaatttt 26698102  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 48825352 - 48825455
Alignment:
Q  154 ggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaagctgatgaa 253  Q
    |||||||||||| |  |||||||||||||| ||||||||||||||||| ||  || |||||| || ||||||  |||||||||||| | |||||||| ||    
T  48825352 ggattaagccacgacatgtggtaattaaaaacaaaattaggatgatttgccttcaaccaccaaaaagattgtaccttaattttgtc-tcaagctgattaa 48825450  T
Q  254 tagaa 258  Q
    |||||    
T  48825451 tagaa 48825455  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 53146986 - 53147116
Alignment:
Q  150 aagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaagctga 249  Q
    ||||||||||||||||||  | ||||||||||||||||||||| |||||||| |   ||  ||||||||  ||||| | |||||||||||   | |||||    
T  53146986 aagaggattaagccaccacatatggtaattaaaagcaaaattatgatgatttgc--tcaatcaccagaaaaattgtagtttaattttgtccacatgctga 53147083  T
Q  250 tgaatagaatttccattttgttggaagactcta 282  Q
    | |||||||   |||||||||||||| ||||||    
T  53147084 ttaatagaaagcccattttgttggaaaactcta 53147116  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 31160930 - 31161042
Alignment:
Q  173 ggtaattaaaagcaaaattaggatgattt--tccaccagccaccagaatgattgttgcttaattttgtctttaagctgatgaatagaatttccattttgt 270  Q
    |||||||||||||||||||||||||||||   ||  || |||||| || | |||  |||||||||| ||| |||| ||||  |||||||| || ||||||    
T  31160930 ggtaattaaaagcaaaattaggatgatttacaccttcaaccaccataagggttggagcttaattttatctataagttgattgatagaattccccttttgt 31161029  T
Q  271 tggaagactctag 283  Q
    || || |||||||    
T  31161030 tgaaaaactctag 31161042  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 129 - 281
Target Start/End: Complemental strand, 9145739 - 9145584
Alignment:
Q  129 ctaagtagcaactcccaaacg---aagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgt 225  Q
    ||||||| ||||||||||||    ||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||  || |||||| || |||||     
T  9145739 ctaagtaacaactcccaaacataaaagaggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattgg 9145640  T
Q  226 tgcttaattttgtctttaagctgatgaatagaatttccattttgttggaagactct 281  Q
     |||||||||| |||  |||||||| ||||||||| ||  ||||||||||||||||    
T  9145639 agcttaattttatctagaagctgattaatagaattccccgtttgttggaagactct 9145584  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 26159657 - 26159752
Alignment:
Q  150 aagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaag 245  Q
    ||||||||||||||||||  |||| ||| |||||||||||||||||||||||  |  ||||||| |||| |||||  |||||||||| ||| ||||    
T  26159657 aagaggattaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaattttatctataag 26159752  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 52243509 - 52243390
Alignment:
Q  164 accatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaagctgatgaatagaatttcc 263  Q
    ||||||||||||||||||| | |||||||||||||||| ||  |||||||||||| |||||  |||||||||||||   |||||||| |||||||   ||    
T  52243509 accatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccaccagaaggattggagcttaattttgtccacaagctgattaatagaaagccc 52243410  T
Q  264 attttgttggaagactctag 283  Q
     ||||||||||| |||||||    
T  52243409 cttttgttggaaaactctag 52243390  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 6700705 - 6700653
Alignment:
Q  15 agaactaagaaaagaaagtatatgttacattaagtttccaaaaacaacgaaaa 67  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  6700705 agaactaagaagagaaagtatatattacattaagtttccaaaaacaatgaaaa 6700653  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 288
Target Start/End: Original strand, 513371 - 513541
Alignment:
Q  121 aaaagaagctaagtagcaactcccaaac---gaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccaga 217  Q
    ||||||||||| ||||| |||||||| |    ||||| ||||| |||||||||||| || |||||||||||||| | ||| |||  |  || ||||| ||    
T  513371 aaaagaagctaggtagctactcccaagcacaaaagagaattaacccaccatgtgtgatatttaaaagcaaaatttgaatggtttgtcttcaaccaccgga 513470  T
Q  218 atgattgttgcttaattttgtctttaagctgatgaatagaatttccattttgttggaagactctagtgttc 288  Q
    | ||| || |||||||||| ||| ||   ||||||||||||||||| ||||||||||||||||||| ||||    
T  513471 aggatcgtagcttaattttatctatatattgatgaatagaatttcctttttgttggaagactctagagttc 513541  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 9959560 - 9959476
Alignment:
Q  15 agaactaagaaaagaaagtatatgttacattaagtttccaaaaacaacgaaaattagcgctaaagccacaactggctcggctaaga 100  Q
    |||||||||||||||| ||||||||||||| |||||||  |||||||| |||| |||||||||| ||| |  ||||||||||||||    
T  9959560 agaactaagaaaagaa-gtatatgttacatcaagtttcttaaaacaacaaaaactagcgctaaaaccatagttggctcggctaaga 9959476  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 35562637 - 35562704
Alignment:
Q  171 gtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtc 239  Q
    |||||||||||||||||||||||||||||||||   ||||| || ||| |||||| |||||||||||||    
T  35562637 gtggtaattaaaagcaaaattaggatgattttctttcagcc-ccggaaggattgtagcttaattttgtc 35562704  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 3452236 - 3452371
Alignment:
Q  153 aggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaagctgatga 252  Q
    |||||||  |||||||||||| ||||||||| ||||||||||||| ||| ||  || |||| |||| |||||| |||||||||| | | |||| ||||||    
T  3452236 aggattataccaccatgtgtgataattaaaaacaaaattaggatggtttgccttcaaccactagaaggattgtagcttaattttatttataagttgatga 3452335  T
Q  253 atagaatttccattttgttggaagactctagtgttc 288  Q
    | | ||||||  |||||||||||| |||||| ||||    
T  3452336 acataatttcttttttgttggaaggctctagagttc 3452371  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 49438 - 49398
Alignment:
Q  150 aagaggattaagccaccatgtgtggtaattaaaagcaaaat 190  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  49438 aagaggattaagtcaccatgtgtggtaattaaaagcaaaat 49398  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 34257687 - 34257587
Alignment:
Q  159 aagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaagctgatgaatagaa 258  Q
    |||||||||  |||| |||||||||| ||| |||||||||||| ||  |  ||||||||| || ||  |||||||||||||| |||| |||| |||||||    
T  34257687 aagccaccacatgtgataattaaaagtaaagttaggatgatttgccttcgaccaccagaacgactgaagcttaattttgtctataagttgattaatagaa 34257588  T
Q  259 t 259  Q
    |    
T  34257587 t 34257587  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 41126114 - 41126158
Alignment:
Q  157 ttaagccaccatgtgtggtaattaaaagcaaaattaggatgattt 201  Q
    ||||||||||| ||||| || |||||||||||||| |||||||||    
T  41126114 ttaagccaccacgtgtgatagttaaaagcaaaatttggatgattt 41126158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 12251010 - 12250963
Alignment:
Q  154 ggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattt 201  Q
    ||||||||||||||  |||| |||||||||||||||||| ||||||||    
T  12251010 ggattaagccaccacatgtgataattaaaagcaaaattatgatgattt 12250963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 1055762 - 1055661
Alignment:
Q  154 ggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattttccaccagccaccagaatgattgttgcttaattttgtctttaagctgatgaa 253  Q
    ||||||||||||||  |||  |||||||||||||||||||||||| || ||  || ||||||  | |||||   |||||||||||||  ||| |||||||    
T  1055762 ggattaagccaccacatgtaataattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtctaaaaggtgatgaa 1055663  T
Q  254 ta 255  Q
    ||    
T  1055662 ta 1055661  T

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