View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6635_low_25 (Length: 309)
Name: NF6635_low_25
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_25 |
 | |
|
| [»] chr6 (10 HSPs) |
| |
|
| [»] scaffold0024 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 2951758 - 2951466
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951758 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
2951659 |
T |
|
| Q |
117 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951658 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
2951559 |
T |
|
| Q |
217 |
ggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2951558 |
ggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgcctgcgaataacataggggaccttgtagatgc |
2951466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 2926976 - 2926686
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
2926976 |
ttgaattataaaagcggaattgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaatcagataagata |
2926877 |
T |
|
| Q |
117 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
216 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2926876 |
gattctatgtagccgactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
2926777 |
T |
|
| Q |
217 |
ggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagat |
307 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2926776 |
gttgaccgtggtgaaaggggccaatagaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttatagat |
2926686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 3004043 - 3004335
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |
|
|
| T |
3004043 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaatcagataagaca |
3004142 |
T |
|
| Q |
117 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3004143 |
gattctatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgattttccatgttttggagctggg |
3004242 |
T |
|
| Q |
217 |
ggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3004243 |
ggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
3004335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 2934415 - 2934123
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
116 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2934415 |
ttgaattataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacgtttgaaatcagataagata |
2934316 |
T |
|
| Q |
117 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934315 |
gattctatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
2934216 |
T |
|
| Q |
217 |
ggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2934215 |
ggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataagggaccttatagatgc |
2934123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 2997662 - 2997951
Alignment:
| Q |
20 |
aattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagat |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
2997662 |
aattataaaaccggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaattagataagatagaa |
2997761 |
T |
|
| Q |
120 |
tctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggt |
219 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||| |||| |||||||||| | ||||||| ||||||||||||| |||||||||||||||||| || | |
|
|
| T |
2997762 |
tctacgtagcatactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggat |
2997861 |
T |
|
| Q |
220 |
gaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||| | |||||||||||||||||| |
|
|
| T |
2997862 |
gaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctgcgttgagtttgcgaattttagaggggaccttgtagatgc |
2997951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 2982688 - 2982390
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
2982688 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggtaggggttcagaataacagtgtttgaaatcagataagata |
2982589 |
T |
|
| Q |
117 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgg- |
215 |
Q |
| |
|
|| |||| |||| || |||||||||||| |||||| ||||| ||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
2982588 |
gaatctacgtagcagaccaagtcgtttaaagatgcctcggttcgttgaagaaaagctttgaagtgaatgagcttctgacgttccatgttttggagatgga |
2982489 |
T |
|
| Q |
216 |
-----gggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
2982488 |
ggcctaggtgaccgtggtgaaaggggccaatggaaacgacattgggggtgtatgcgttttcgttgactgtgcgaataacagaggggaccttgtagatgc |
2982390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 2659265 - 2659557
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||| || |
|
|
| T |
2659265 |
ttgaattataaaacaggaatcgattaagattaacttaacaagttcattatcagaaaatggtagggtttcggaataacaacttttgaaacgagataagtta |
2659364 |
T |
|
| Q |
117 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
216 |
Q |
| |
|
|||| ||||| | || ||| || ||||||||| ||||||| |||||||||| | || |||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
2659365 |
gattttatgttgctgaccaaggtgtctaaacatgcattggttcgttggagaaaagctttcaagtaaatgagtttgtgacgttccatgttttggagctggg |
2659464 |
T |
|
| Q |
217 |
ggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||| | || |||| || |||||||| || |||||||||||||||||| |
|
|
| T |
2659465 |
ggtgatcatggtgaaaggggccaatggaaacgagagtgggggtgtatgctttttcgttgagtgtgcgaatagcagaggggaccttgtagatgc |
2659557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 2964301 - 2964006
Alignment:
| Q |
20 |
aattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagat |
119 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
2964301 |
aattataaaaccagaatcgattaagattaacttgacaagttcatcatgagaaaatggtagagtttcggaataacagcatttgaaatcagataagatagca |
2964202 |
T |
|
| Q |
120 |
tctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttgga------gct |
213 |
Q |
| |
|
||||||||| || | ||||||||| || || ||||| |||||||||||| ||||||||||||||||| || | |||||||||||||| | | |
|
|
| T |
2964201 |
tctatgtagtagaccatttcgtttaaagttgtctcggttcgttggagaaaatctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggt |
2964102 |
T |
|
| Q |
214 |
gggggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| ||||||||||||||||| || |||| || |||||||| || |||||||||||||||||| |
|
|
| T |
2964101 |
gggggtgaccgtggtgaaaggggccgatggaaacgaacttgggggtgtatgcgttttcgttgagtgtgcgaatatcagaggggaccttgtagatgc |
2964006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 309
Target Start/End: Complemental strand, 2972676 - 2972522
Alignment:
| Q |
157 |
ttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttggg |
256 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
2972676 |
ttcttttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttggg |
2972577 |
T |
|
| Q |
257 |
ggtg--tatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
||| ||||| |||| |||| || ||||||| | |||||||||||||||||| |
|
|
| T |
2972576 |
agtgtatatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgc |
2972522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 2973826 - 2973727
Alignment:
| Q |
20 |
aattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagat |
119 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||| |||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
2973826 |
aattataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggttttggaataacagcctttgaaatcagataagatagat |
2973727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 35486 - 35781
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcat---gagaaaatggtagggtttcagaataacaacttttgaaatcagataag |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
35486 |
ttgaattataaaaccggaatcgattaagattaacttaacaagttcttcatcctgaggaaatgatagggtttccgaataacaacatttgaaatcagataag |
35585 |
T |
|
| Q |
114 |
atagattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagct |
213 |
Q |
| |
|
||||| | ||||| | | ||| | ||||| |||| ||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
35586 |
atagaatatatgtcgctgatcaagatgcttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgtgacgttccatgtttttgagct |
35685 |
T |
|
| Q |
214 |
gggggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
35686 |
gggggtgaccgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgc |
35781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 3338997 - 3338705
Alignment:
| Q |
17 |
ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
3338997 |
ttgaattataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttaggaattccgaataacaacgtttgaaatcaggtaagata |
3338898 |
T |
|
| Q |
117 |
gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg |
216 |
Q |
| |
|
|| |||| ||||| || ||||| ||||||||||||| ||||| |||||||||| | ||||||||||||||||| |||| ||||||||||| ||| ||| |
|
|
| T |
3338897 |
gactctacgtagaagaccaagtcttttaaacatgcctcggttcgttggagaaaagctttgaagtaaatgagtttgtgacgttccatgttttagagtcggg |
3338798 |
T |
|
| Q |
217 |
ggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgc |
309 |
Q |
| |
|
| ||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||| |||| || |||||||||| |
|
|
| T |
3338797 |
ttttaccgtggtgaaaggggccaatggaaacgaacttaggggtgtatgcgtcttcattgtgtttgcgaataacagagggtactttgtagatgc |
3338705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 49618197 - 49618100
Alignment:
| Q |
31 |
cggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattctatgtag |
128 |
Q |
| |
|
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|
|
| T |
49618197 |
cggaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggttttggaataagagtgattgaaatgagataagatggaatctatgtag |
49618100 |
T |
|
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 49613093 - 49612955
Alignment:
| Q |
155 |
ggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtg------accatggtgaaaggggccaatggaaacg |
248 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||| || | |||||||||||||| ||| |||| || ||||| || ||||||||||||| | |
|
|
| T |
49613093 |
ggttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggaggtggtggtggcggtgactgtggtggaaagggccaatggaaatg |
49612994 |
T |
|
| Q |
249 |
accttgggggtgtatgcgtctttgttgtgtctgcgaata |
287 |
Q |
| |
|
|| |||||||||||||||||| |||| | ||||||||| |
|
|
| T |
49612993 |
actttgggggtgtatgcgtctgggttgagactgcgaata |
49612955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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