View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_28 (Length: 288)
Name: NF6635_low_28
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 53423356 - 53423630
Alignment:
| Q |
1 |
atttcaagaactgttttagaaattttcaaaggtaaagtgaactaatcattgagattaaattgattattcacattttgtataaatatgaaaagtctaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53423356 |
atttcaagaactgttttagaaattttcaaaggtaaagtgaactaatcattgagattaaattgattattcacattttgtataaatatgaaaagtctatcca |
53423455 |
T |
|
| Q |
101 |
gaggtcatgatggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtgggcatgacatagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53423456 |
gaggtcatgatggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtgggcatgacatagaag |
53423555 |
T |
|
| Q |
201 |
tccctgatttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctg |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53423556 |
tccctgatttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctg |
53423630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 53308217 - 53308373
Alignment:
| Q |
112 |
ggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtgggcatgacatagaagtccctgattta |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||| |
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| T |
53308217 |
ggccgatctgattgcagaggcactccaaatagggtttttaaatttaattctgcctgcaacgcctgaaacatgagggcatgacatagaagtccccgattta |
53308316 |
T |
|
| Q |
212 |
aagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatc |
268 |
Q |
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| T |
53308317 |
aagttatatggtgagggctttttcccttttggaacatcagttacatcattaccaatc |
53308373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 53431111 - 53431258
Alignment:
| Q |
101 |
gaggtcatgatggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtgggcatgacatagaag |
200 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||| |||| |
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| T |
53431111 |
gaggtcatgatggctgatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctgaaacatgtggacatgccatggaag |
53431210 |
T |
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| Q |
201 |
tccctgatttaaagttatatggtgatggctttttcccttttggaacat |
248 |
Q |
| |
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||||||||| || ||||||||||||||| ||||| ||||||||||||| |
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| T |
53431211 |
tccctgattcaatgttatatggtgatggtttttttccttttggaacat |
53431258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 26095627 - 26095727
Alignment:
| Q |
101 |
gaggtcatgatggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtgggcatgacatagaag |
200 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
26095627 |
gaggtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcctgaaacatgtgggcatgacatggaag |
26095726 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
26095727 |
t |
26095727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 48374663 - 48374550
Alignment:
| Q |
88 |
aaaagtctaaccagaggtcatgatggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtggg |
187 |
Q |
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||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |
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| T |
48374663 |
aaaagcctgaccagatgtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtggg |
48374564 |
T |
|
| Q |
188 |
catgacatagaagt |
201 |
Q |
| |
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|||||||| ||||| |
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| T |
48374563 |
catgacatggaagt |
48374550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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