View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6635_low_30 (Length: 271)

Name: NF6635_low_30
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6635_low_30
NF6635_low_30
[»] chr1 (6 HSPs)
chr1 (16-257)||(7015073-7015315)
chr1 (189-226)||(37919678-37919715)
chr1 (189-231)||(7013203-7013245)
chr1 (189-231)||(45886929-45886971)
chr1 (190-231)||(52690252-52690293)
chr1 (115-171)||(21485649-21485705)
[»] chr6 (1 HSPs)
chr6 (190-231)||(12488469-12488510)
[»] chr5 (2 HSPs)
chr5 (189-231)||(25995000-25995042)
chr5 (189-231)||(26092532-26092574)
[»] chr4 (1 HSPs)
chr4 (189-231)||(32303866-32303908)
[»] chr2 (1 HSPs)
chr2 (189-231)||(26129314-26129356)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 7015315 - 7015073
Alignment:
Q  16 caaaaatgatttgccacgacacccc-attgagtctacaacttcaatagtccgtgtagtaatacaccctctggttcgttccactatcatatgggtaggttt 114  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  7015315 caaaaatgatt-gccacgacacccccattgagtctacaacttcaatagtccgtgtagtaatacactctctggttcgctccactatcatatgggtaggttt 7015217  T
Q  115 tgaattatgctcttcaaccaggataaaacattcgcgtcctgcagacattccaaaaatacttctgtactagactactagttaactaacgtatgtgtaaaat 214  Q
    |||||| ||||||||| |||||| |||||||||| | ||| ||||||||   ||||||| |||||||||||||| ||||||||||||| | |||||||||    
T  7015216 tgaattctgctcttcatccaggacaaaacattcgtgccctacagacattttgaaaatacctctgtactagactattagttaactaacgcaagtgtaaaat 7015117  T
Q  215 taacataac-ttaaaattgaattctactctccacccagcacatt 257  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  7015116 taacataactttaaaattgaattctgctctccacccagcacatt 7015073  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 37919678 - 37919715
Alignment:
Q  189 ctagttaactaacgtatgtgtaaaattaacataactta 226  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37919678 ctagttaactaacgtatgtgtaaaattaacataactta 37919715  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 7013203 - 7013245
Alignment:
Q  189 ctagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    |||||||||||||| | ||||||||||||||| ||||||||||    
T  7013203 ctagttaactaacgcaagtgtaaaattaacatgacttaaaatt 7013245  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 45886929 - 45886971
Alignment:
Q  189 ctagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    |||||||||||||||| || |||||||||||| ||||||||||    
T  45886929 ctagttaactaacgtaggtataaaattaacatgacttaaaatt 45886971  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 52690293 - 52690252
Alignment:
Q  190 tagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    ||||||||||||| | |||||||||||| |||||||||||||    
T  52690293 tagttaactaacgcaagtgtaaaattaatataacttaaaatt 52690252  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 21485705 - 21485649
Alignment:
Q  115 tgaattatgctcttcaaccaggataaaacattcgcgtcctgcagacattccaaaaat 171  Q
    |||||| ||||||||| |||| | |||||| ||||| |||||||||||| |||||||    
T  21485705 tgaattctgctcttcacccagcacaaaacactcgcgacctgcagacatttcaaaaat 21485649  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 12488469 - 12488510
Alignment:
Q  190 tagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  12488469 tagttaactaacgtaagtgtaaaattaacatgacttaaaatt 12488510  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 25995042 - 25995000
Alignment:
Q  189 ctagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    |||||||||||||| | ||||||||||||||| ||||||||||    
T  25995042 ctagttaactaacgcaagtgtaaaattaacatgacttaaaatt 25995000  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 26092532 - 26092574
Alignment:
Q  189 ctagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    |||||||||||||| | ||||||||||||||| ||||||||||    
T  26092532 ctagttaactaacgcaagtgtaaaattaacatgacttaaaatt 26092574  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 32303866 - 32303908
Alignment:
Q  189 ctagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    |||||||||||||| | ||||||||||||||| ||||||||||    
T  32303866 ctagttaactaacgcaagtgtaaaattaacatgacttaaaatt 32303908  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 26129356 - 26129314
Alignment:
Q  189 ctagttaactaacgtatgtgtaaaattaacataacttaaaatt 231  Q
    |||||||||||||| | ||||||||||||||| ||||||||||    
T  26129356 ctagttaactaacgcaagtgtaaaattaacatgacttaaaatt 26129314  T

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