View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_31 (Length: 261)
Name: NF6635_low_31
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 26880754 - 26880981
Alignment:
| Q |
15 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaaccaattacgacacgtacctgaacaaatataattttaagaacaattaatc |
114 |
Q |
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| T |
26880754 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaacaaatcacgatacgtacctgaacacatacaattttaagaagaattaatc |
26880853 |
T |
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| Q |
115 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataactccatcagcaccaacactga |
214 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26880854 |
acctcaggctcactaccatcagagttgaaaatcctcattgtatagtcagtgccattgataccaggcaagacaaatataacttcatctgcaccaacactga |
26880953 |
T |
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| Q |
215 |
agttacgatcacagagttgcacagcttt |
242 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
26880954 |
agttacgatcacagagttgcacaacttt |
26880981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 40252464 - 40252591
Alignment:
| Q |
115 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataactccatcagcaccaacactga |
214 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||||| | |
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| T |
40252464 |
acctcaggctcactaccatcagagttgaaaatcctcattgtataatcagtaccatcgataccaggcaatacaaagataactccatcagcaccaacaccaa |
40252563 |
T |
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| Q |
215 |
agttacgatcacagagttgcacagcttt |
242 |
Q |
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||||||||||||| ||||| |||||||| |
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| T |
40252564 |
agttacgatcacatagttgtacagcttt |
40252591 |
T |
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