View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_34 (Length: 248)
Name: NF6635_low_34
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 26732893 - 26733139
Alignment:
| Q |
2 |
gactgagatgaatgctctagctataatccattgtcacaaagttgatttacatctaatcactctagtataatccaaaaagattatttatatttaaacttga |
101 |
Q |
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| T |
26732893 |
gactgaaatgaatgctctagctataatccattgtcacaaagttgatttacatctaatcactctagtataagccaaaaagattatttatatttaaacttga |
26732992 |
T |
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| Q |
102 |
aaatgtttgggacagaaccatatacgcataaaaacaattaaaaatttaactaatgcataatacactttaaccaaacatagaatacgattctgcaatatct |
201 |
Q |
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| T |
26732993 |
aaatgtttgggacagaaccatatacgcataaaaacaattaaaaatttaactaatgcataatacactttaaccaaacatagaatacgattctgcaatatct |
26733092 |
T |
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| Q |
202 |
agtggatgatggtggaaataacttgaaacatagaatcaatgccttca |
248 |
Q |
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| T |
26733093 |
agtggatgatggtggaaataacttgaaacatagaatcaatgccttca |
26733139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 48 - 248
Target Start/End: Original strand, 26724460 - 26724659
Alignment:
| Q |
48 |
ttacatctaatcactctagtataatccaaaaagattatttatatttaaacttgaaaatgtttgggacagaaccatatacgcataaaaacaattaaaaatt |
147 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26724460 |
ttacatctaatcactctagtataagccaaaaagattatttatatt-aaacttggaaatgttagggacagaaccatatacgcataaaaacaattaaaaatt |
26724558 |
T |
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| Q |
148 |
taactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggatgatggtggaaataacttgaaacatagaatcaatgccttc |
247 |
Q |
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| T |
26724559 |
taactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggatgatggtggaaataacttgaaacatagaatcaatgccttc |
26724658 |
T |
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